Probing substates in sperm whale myoglobin using high-pressure crystallography

被引:129
作者
Urayama, P
Phillips, GN
Gruner, SM [1 ]
机构
[1] Cornell Univ, Dept Phys, Ithaca, NY 14853 USA
[2] Univ Wisconsin, Dept Biochem, Madison, WI 53706 USA
关键词
D O I
10.1016/S0969-2126(01)00699-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Pressures in the 100 MPa range are known to have an enormous number of effects on the action of proteins, but straightforward means for determining the structural basis of these effects have been lacking. Here, crystallography has been used to probe effects of pressure on sperm whale myoglobin structure. A comparison of pressure effects with those seen at low pH suggests that structural changes under pressure are interpretable as a shift in the populations of conformational substates. Furthermore, a novel high-pressure protein crystal-cooling method has been used to show low-temperature metastability, providing an alternative to room temperature, beryllium pressure cell-based techniques. The change in protein structure due to pressure is not purely compressive and involves conformational changes important to protein activity. Correlation with low-pH structures suggests observed structural changes are associated with global conformational substates. Methods developed here open up a direct avenue for exploration of the effects of pressure on proteins.
引用
收藏
页码:51 / 60
页数:10
相关论文
共 51 条
[1]   Characterizing global substates of myoglobin [J].
Andrews, BK ;
Romo, T ;
Clarage, JB ;
Pettitt, BM ;
Phillips, GN .
STRUCTURE, 1998, 6 (05) :587-594
[2]   REBINDING AND RELAXATION IN THE MYOGLOBIN POCKET [J].
ANSARI, A ;
BERENDZEN, J ;
BRAUNSTEIN, D ;
COWEN, BR ;
FRAUENFELDER, H ;
HONG, MK ;
IBEN, IET ;
JOHNSON, JB ;
ORMOS, P ;
SAUKE, TB ;
SCHOLL, R ;
SCHULTE, A ;
STEINBACH, PJ ;
VITTITOW, J ;
YOUNG, RD .
BIOPHYSICAL CHEMISTRY, 1987, 26 (2-3) :337-355
[3]   DYNAMICS OF LIGAND-BINDING TO MYOGLOBIN [J].
AUSTIN, RH ;
BEESON, KW ;
EISENSTEIN, L ;
FRAUENFELDER, H ;
GUNSALUS, IC .
BIOCHEMISTRY, 1975, 14 (24) :5355-5373
[4]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[5]   HIGH-PRESSURE INFLUENCES ON GENE AND PROTEIN EXPRESSION [J].
BARTLETT, DH ;
KATO, C ;
HORIKOSHI, K .
RESEARCH IN MICROBIOLOGY, 1995, 146 (08) :697-706
[6]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[7]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475
[8]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[9]  
CARVER TE, 1990, J BIOL CHEM, V265, P20007
[10]  
CHALIKIAN TV, 1994, BIOPHYS CHEM, V51, P89, DOI 10.1016/0301-4622(94)85007-0