GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways

被引：36

作者：

Martinez-Guerrero, C. E. ^{[1
]}

Ciria, R. ^{[1
]}

Abreu-Goodger, C. ^{[2
]}

Moreno-Hagelsieb, G. ^{[3
]}

Merino, E. ^{[1
]}

机构：

[1] Univ Nacl Autonoma Mexico, Inst Biotechnol, Dept Mol Microbiol, Cuernavaca 62210, Morelos, Mexico

[2] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England

[3] Wilfrid Laurier Univ, Dept Biol, Waterloo, ON N2L 3C5, Canada

来源：

NUCLEIC ACIDS RESEARCH | 2008年 / 36卷

基金：

加拿大自然科学与工程研究理事会;

关键词：

D O I：

10.1093/nar/gkn330

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 [生物化学与分子生物学]; 081704 [应用化学];

摘要：

The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to have an integrated graphical representation of the function of genes at multiple levels, their phylogenetic distribution and their genomic context. The sequence of any of the genes can be easily retrieved, as well as the 5 or 3 regulatory regions, greatly facilitating further types of analysis. GeConT 2 is available at: http://bioinfo.ibt.unam.mx/gecont.

引用

页码：W176 / W180

页数：5

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