Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

被引：862

作者：

Varshney, Rajeev K. ^{[1
,2
]}

Song, Chi ^{[3
]}

Saxena, Rachit K. ^{[1
]}

Azam, Sarwar ^{[1
]}

Yu, Sheng ^{[3
]}

Sharpe, Andrew G. ^{[4
]}

Cannon, Steven ^{[5
]}

Baek, Jongmin ^{[6
]}

Rosen, Benjamin D. ^{[6
]}

Tar'an, Bunyamin ^{[7
]}

Millan, Teresa ^{[8
]}

Zhang, Xudong ^{[3
]}

Ramsay, Larissa D. ^{[4
]}

Iwata, Aiko ^{[9
]}

Wang, Ying ^{[3
]}

Nelson, William ^{[10
]}

Farmer, Andrew D. ^{[11
]}

Gaur, Pooran M. ^{[1
]}

Soderlund, Carol ^{[10
]}

Penmetsa, R. Varma ^{[6
]}

Xu, Chunyan ^{[3
]}

Bharti, Arvind K. ^{[11
]}

He, Weiming ^{[3
]}

Winter, Peter ^{[12
]}

Zhao, Shancen ^{[3
]}

Hane, James K. ^{[13
]}

Carrasquilla-Garcia, Noelia ^{[6
]}

Condie, Janet A. ^{[4
]}

Upadhyaya, Hari D. ^{[1
]}

Luo, Ming-Cheng ^{[6
]}

Thudi, Mahendar ^{[1
]}

Gowda, C. L. L. ^{[1
]}

Singh, Narendra P. ^{[14
]}

Lichtenzveig, Judith ^{[15
]}

Gali, Krishna K. ^{[4
]}

Rubio, Josefa ^{[8
]}

Nadarajan, N. ^{[16
]}

Dolezel, Jaroslav ^{[17
]}

Bansal, Kailash C. ^{[18
]}

Xu, Xun

Edwards, David ^{[19
,20
]}

Zhang, Gengyun ^{[3
]}

Kahl, Guenter ^{[21
]}

Gil, Juan ^{[8
]}

Singh, Karam B. ^{[13
,22
]}

Datta, Swapan K. ^{[23
]}

Jackson, Scott A. ^{[9
]}

Wang, Jun ^{[3
,24
]}

Cook, Douglas R. ^{[6
]}

机构：

[1] Int Crops Res Inst Semi Arid Trop, Hyderabad, Andhra Pradesh, India

[2] CGIAR Generat Challenge Programme, Texcoco, Mexico

[3] Beijing Genom Inst BGI Shenzhen, Shenzhen, Peoples R China

[4] Natl Res Council Canada NRC CNRC, Ottawa, ON, Canada

[5] Iowa State Univ, USDA ARS, Ames, IA USA

[6] Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA

[7] Univ Saskatchewan, Ctr Crop Dev, Saskatoon, SK S7N 0W0, Canada

[8] Univ Cordoba, Dept Genet, Cordoba, Spain

[9] Univ Georgia, Ctr Appl Genet Technol, Athens, GA 30602 USA

[10] Univ Arizona, Tucson, AZ USA

[11] NCGR, Santa Fe, NM USA

[12] GenXPro GmbH, Frankfurt, Germany

[13] CSIRO, Canberra, ACT, Australia

[14] ICAR Res Complex, All India Coordinated Res Project Chickpea AICRP, New Delhi, India

[15] Curtin Univ, Bentley, WA, Australia

[16] ICAR Res Complex, IIPR, Kanpur, Uttar Pradesh, India

[17] Inst Expt Bot, Ctr Reg Hana Biotechnol & Agr Res, Olomouc, Czech Republic

[18] ICAR Res Complex, NBPGR, New Delhi, India

[19] ACPFG, St Lucia, Qld, Australia

[20] Univ Queensland, St Lucia, Qld, Australia

[21] Goethe Univ Frankfurt, D-60054 Frankfurt, Germany

[22] Univ Western Australia, Univ Western Australia Inst Agr, Crawley, Australia

[23] ICAR Res Complex, Div Crop Sci, New Delhi, India

[24] Univ Copenhagen, Dept Biol, Copenhagen, Denmark

来源：

NATURE BIOTECHNOLOGY | 2013年 / 31卷 / 03期

基金：

美国国家科学基金会; 澳大利亚研究理事会; 美国食品与农业研究所;

关键词：

L; INTEGRATION; EVOLUTION; QUALITY; LEGUME;

D O I：

10.1038/nbt.2491

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food security in developing countries. We report the similar to 738-Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes. Resequencing and analysis of 90 cultivated and wild genotypes from ten countries identifies targets of both breeding-associated genetic sweeps and breeding-associated balancing selection. Candidate genes for disease resistance and agronomic traits are highlighted, including traits that distinguish the two main market classes of cultivated chickpea-desi and kabuli. These data comprise a resource for chickpea improvement through molecular breeding and provide insights into both genome diversity and domestication.

引用

页码：240 / 246

页数：7

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