Toward an evaluation of metabolite channeling in vivo

被引:17
作者
Obata, Toshihiro [1 ,2 ]
机构
[1] Univ Nebraska, Dept Biochem, 1901 Vine St, Lincoln, NE 68588 USA
[2] Univ Nebraska, Ctr Plant Sci Innovat, 1901 Vine St, Lincoln, NE 68588 USA
基金
美国国家科学基金会;
关键词
PROLINE UTILIZATION; SUBSTRATE; ENZYMES; DEHYDROGENASE; SCAFFOLDS; PATHWAYS; DOMAIN;
D O I
10.1016/j.copbio.2019.09.013
中图分类号
Q5 [生物化学];
学科分类号
070307 [化学生物学];
摘要
Intermediates of metabolic pathways are sometimes contained within cavities of enzyme molecules and passed directly from active centers of one to next enzymes without diffusing into bulk matrix. This 'metabolite channeling' is postulated to have various advantages in enhancing and regulating pathway reactions and considered as a central unit to control metabolic network. Therefore, it has a strong potential in applications to metabolic engineering to enhance the production of desired molecules. Quantitative evaluation of the effects of metabolite channeling is crucial for its appropriate application and further understanding of its functions. In the present review, current approaches to demonstrate functional metabolite channeling will be reviewed and their extension toward quantitative evaluation of channeling effects in vivo will be discussed.
引用
收藏
页码:55 / 61
页数:7
相关论文
共 44 条
[1]
Cyanobacterial carboxysome mutant analysis reveals the influence of enzyme compartmentalization on cellular metabolism and metabolic network rigidity [J].
Abernathy, Mary H. ;
Czajka, Jeffrey J. ;
Allen, Douglas K. ;
Hill, Nicholas C. ;
Cameron, Jeffrey C. ;
Tang, Yinjie J. .
METABOLIC ENGINEERING, 2019, 54 :222-231
[2]
Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis [J].
Abernathy, Mary H. ;
Yu, Jingjie ;
Ma, Fangfang ;
Liberton, Michelle ;
Ungerer, Justin ;
Hollinshead, Whitney D. ;
Gopalakrishnan, Saratram ;
He, Lian ;
Maranas, Costas D. ;
Pakrasi, Himadri B. ;
Allen, Doug K. ;
Tang, Yinjie J. .
BIOTECHNOLOGY FOR BIOFUELS, 2017, 10
[3]
Channeling in native microbial pathways: Implications and challenges for metabolic engineering [J].
Abernathy, Mary H. ;
He, Lian ;
Tang, Yinjie J. .
BIOTECHNOLOGY ADVANCES, 2017, 35 (06) :805-814
[4]
Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation [J].
Arrivault, Stephanie ;
Obata, Toshihiro ;
Szecowka, Marek ;
Mengin, Virginie ;
Guenther, Manuela ;
Hoehne, Melanie ;
Fernie, Alisdair R. ;
Stitt, Mark .
JOURNAL OF EXPERIMENTAL BOTANY, 2017, 68 (02) :283-298
[5]
lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites [J].
Ataman, Meric ;
Hatzimanikatis, Vassily .
PLOS COMPUTATIONAL BIOLOGY, 2017, 13 (07)
[6]
Does acetogenesis really require especially low reduction potential? [J].
Bar-Even, Arren .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2013, 1827 (03) :395-400
[7]
How to prove the existence of metabolons? [J].
Bassard, Jean-Etienne ;
Halkier, Barbara Ann .
PHYTOCHEMISTRY REVIEWS, 2018, 17 (02) :211-227
[8]
Direct Evidence for Metabolon Formation and Substrate Channeling in Recombinant TCA Cycle Enzymes [J].
Bulutoglu, Beyza ;
Garcia, Kristen E. ;
Wu, Fei ;
Minteer, Shelley D. ;
Banta, Scott .
ACS CHEMICAL BIOLOGY, 2016, 11 (10) :2847-2853
[9]
Synthetic protein scaffolds provide modular control over metabolic flux [J].
Dueber, John E. ;
Wu, Gabriel C. ;
Malmirchegini, G. Reza ;
Moon, Tae Seok ;
Petzold, Christopher J. ;
Ullal, Adeeti V. ;
Prather, Kristala L. J. ;
Keasling, Jay D. .
NATURE BIOTECHNOLOGY, 2009, 27 (08) :753-U107
[10]
Evolutionary Morphing of Tryptophan Synthase: Functional Mechanisms for the Enzymatic Channeling of Indole [J].
Fleming, Jennifer R. ;
Schupfner, Michael ;
Busch, Florian ;
Basle, Arnaud ;
Ehrmann, Alexander ;
Sterner, Reinhard ;
Mayans, Olga .
JOURNAL OF MOLECULAR BIOLOGY, 2018, 430 (24) :5066-5079