Evaluation of microarray surfaces and arraying parameters for autoantibody profiling

被引:40
作者
Balboni, Imelda [1 ,2 ]
Limb, Cindy [1 ]
Tenenbaum, Jessica D.
Utz, Paul J. [1 ,3 ]
机构
[1] Stanford Univ, Dept Med, Div Rheumatol & Immunol, Stanford, CA 94305 USA
[2] Stanford Univ, Dept Pediat, Div Rheumatol, Stanford, CA 94305 USA
[3] Stanford Univ, Dept Med, Stanford, CA 94305 USA
关键词
autoantibody profiling; autoantigens; autoimmune disease; multiplexed proteomics technology; protein microarrays;
D O I
10.1002/pmic.200800146
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Autoantigen microarrays are being used increasingly to study autoimmunity. Significant variation has been observed when comparing microarray surfaces, printing methods, and probing conditions. In the present study, 24 surfaces and several arraying parameters were analyzed using >500 feature autoantigen microarrays printed with quill pins. A small subset of slides, including FAST (R), PATH (R), and SuperEpoxy2, performed well while maintaining the sensitivity and specificity of autoantigen microarrays previously demonstrated by our laboratory. By optimizing the major variables in our autoantigen microarray platform, subtle differences in serum samples can be identified that will shed light on disease pathogenesis.
引用
收藏
页码:3443 / 3449
页数:7
相关论文
共 15 条
[1]   Next generation of protein microarray support materials:: Evaluation for protein and antibody microarray applications [J].
Angenendt, P ;
Glökler, J ;
Sobek, J ;
Lehrach, H ;
Cahill, DJ .
JOURNAL OF CHROMATOGRAPHY A, 2003, 1009 (1-2) :97-104
[2]   Multiplexed protein array platforms for analysis of autoimmune diseases [J].
Balboni, Imelda ;
Chan, Steven M. ;
Kattah, Michael ;
Tenenbaum, Jessica D. ;
Butte, Atul J. ;
Utz, Paul J. .
ANNUAL REVIEW OF IMMUNOLOGY, 2006, 24 :391-418
[3]   Parallel detection of autoantibodies with microarrays in rheumatoid diseases [J].
Feng, YF ;
Ke, X ;
Ma, RS ;
Chen, P ;
Hu, GG ;
Liu, FZ .
CLINICAL CHEMISTRY, 2004, 50 (02) :416-422
[4]  
Haab BB, 2001, GENOME BIOL, V2
[5]   Profiling humoral autoimmune repertoire of dilated cardiomyopathy (DCM) patients and development of a disease-associated protein chip [J].
Horn, S ;
Lueking, A ;
Murphy, D ;
Staudt, A ;
Gutjahr, C ;
Schulte, K ;
König, A ;
Landsberger, M ;
Lehrach, H ;
Felix, SB ;
Cahill, DJ .
PROTEOMICS, 2006, 6 (02) :605-613
[6]   Antigen microarray profiling of autoantibodies in rheumatoid arthritis [J].
Hueber, W ;
Kidd, BA ;
Tomooka, BH ;
Lee, BJ ;
Bruce, B ;
Fries, JF ;
Sonderstrup, G ;
Monach, P ;
Drijfhout, JW ;
van Venrooij, WJ ;
Utz, PJ ;
Genovese, MC ;
Robinson, WH .
ARTHRITIS AND RHEUMATISM, 2005, 52 (09) :2645-2655
[7]   Proteomic analysis of secreted proteins in early rheumatoid arthritis: anti-citrulline autoreactivity is associated with up regulation of proinflammatory cytokines [J].
Hueber, Wolfgang ;
Tomooka, Beren H. ;
Zhao, Xiaoyan ;
Kidd, Brian A. ;
Drijfhout, Jan W. ;
Fries, James F. ;
van Venrooij, Walther J. ;
Metzger, Allan L. ;
Genovese, Mark C. ;
Robinson, William H. .
ANNALS OF THE RHEUMATIC DISEASES, 2007, 66 (06) :712-719
[8]   Lipid microarrays identify key mediators of autoimmune brain inflammation [J].
Kanter, JL ;
Narayana, S ;
Ho, PP ;
Catz, I ;
Warren, KG ;
Sobel, RA ;
Steinman, L ;
Robinson, WH .
NATURE MEDICINE, 2006, 12 (01) :138-143
[9]   A new two-color Fab labeling method for autoantigen protein microarrays [J].
Kattah, Michael G. ;
Alemi, Golnaz R. ;
Thibault, Donna L. ;
Balboni, Imelda ;
Utz, Paul J. .
NATURE METHODS, 2006, 3 (09) :745-751
[10]   Protein array autoantibody profiles for insights into systemic lupus erythematosus and incomplete lupus syndromes [J].
Li, Q. -Z. ;
Zhou, J. ;
Wandstrat, A. E. ;
Carr-Johnson, F. ;
Branch, V. ;
Karp, D. R. ;
Mohan, C. ;
Wakeland, E. K. ;
Olsen, N. J. .
CLINICAL AND EXPERIMENTAL IMMUNOLOGY, 2007, 147 (01) :60-70