Genomic database resources for Dictyostelium discoideum

被引:14
作者
Kreppel, L [1 ]
Kimmel, AR [1 ]
机构
[1] NIDDKD, Lab Cellular & Dev Biol 50 3351, NIH, Bethesda, MD 20892 USA
关键词
D O I
10.1093/nar/30.1.84
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Dictyostelium is an attractive model system for the study of mechanisms basic to cellular function or complex multicellular developmental processes. Recent advances in Dictyosteliumgenomics have generated a wide spectrum of resources. However, much of the current genomic sequence information is still not currently available through GenBank or related databases. Thus, many investigators are unaware that extensive sequence data from Dictyostelium has been compiled, or of its availability and access. Here, we discuss progress in Dictyostelium genomics and gene annotation, and highlight the primary portals for sequence access, manipulation and analysis (http://genome.imb-jena.de/dictyostelium/; http://dictygenome.bcm.tmc.edu/; http://www.sanger. ac.uk/Projects/D_discoideum/; http://www.csm.biol. tsukuba.ac.jp/cDNAproject.html).
引用
收藏
页码:84 / 86
页数:3
相关论文
共 16 条
[1]  
ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[2]   HAPPY MAPPING - LINKAGE MAPPING USING A PHYSICAL ANALOG OF MEIOSIS [J].
DEAR, PH ;
COOK, PR .
NUCLEIC ACIDS RESEARCH, 1993, 21 (01) :13-20
[3]   Base-calling of automated sequencer traces using phred.: II.: Error probabilities [J].
Ewing, B ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :186-194
[4]   Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment [J].
Ewing, B ;
Hillier, L ;
Wendl, MC ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :175-185
[5]   The complex repeats of Dictyostelium discoideum [J].
Glöckner, G ;
Szafranski, K ;
Winckler, T ;
Dingermann, T ;
Quail, MA ;
Cox, E ;
Eichinger, L ;
Noegel, AA ;
Rosenthal, A .
GENOME RESEARCH, 2001, 11 (04) :585-594
[6]   SEQUENCE ORGANIZATION IN DICTYOSTELIUM - UNIQUE STRUCTURE AT THE 5'-ENDS OF PROTEIN CODING GENES [J].
KIMMEL, AR ;
FIRTEL, RA .
NUCLEIC ACIDS RESEARCH, 1983, 11 (02) :541-552
[7]  
KIMMEL AR, 1982, DEV DICTYOSTELIUM DI, P234
[8]   A high-resolution HAPPY map of Dictyostelium discoideum chromosome 6 [J].
Konfortov, BA ;
Cohen, HM ;
Bankier, AT ;
Dear, PH .
GENOME RESEARCH, 2000, 10 (11) :1737-1742
[9]   Ordered yeast artificial chromosome clones representing the Dictyostelium discoideum genome [J].
Kuspa, A ;
Loomis, WF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (11) :5562-5566
[10]   TAGGING DEVELOPMENTAL GENES IN DICTYOSTELIUM BY RESTRICTION ENZYME-MEDIATED INTEGRATION OF PLASMID DNA [J].
KUSPA, A ;
LOOMIS, WF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (18) :8803-8807