Evidence for two independent prostate cancer risk-associated loci in the HNF1B gene at 17q12

被引:135
作者
Sun, Jielin [2 ,3 ]
Zheng, Siqun Lilly [2 ,3 ]
Wiklund, Fredrik [1 ]
Isaacs, Sarah D. [4 ]
Purcell, Lina D. [2 ,3 ]
Gao, Zhengrong [2 ,3 ]
Hsu, Fang-Chi [2 ,5 ]
Kim, Seong-Tae [2 ,3 ]
Liu, Wennuan [2 ,3 ]
Zhu, Yi [2 ,3 ]
Stattin, Paer [6 ]
Adami, Hans-Olov [1 ,7 ]
Wiley, Kathleen E. [4 ]
Dimitrov, Latchezar [2 ,3 ]
Sun, Jishan [2 ,3 ]
Li, Tao [2 ,3 ]
Turner, Aubrey R. [2 ,3 ]
Adams, Tamara S. [2 ,3 ]
Adolfsson, Jan [8 ]
Johansson, Jan-Erik [9 ]
Lowey, James [10 ]
Trock, Bruce J. [4 ]
Partin, Alan W. [4 ]
Walsh, Patrick C. [4 ]
Trent, Jeffrey M. [10 ]
Duggan, David [10 ]
Carpten, John [10 ]
Chang, Bao-Li [2 ,3 ]
Gronberg, Henrik [1 ]
Isaacs, William B. [4 ]
Xu, Jianfeng [2 ,3 ]
机构
[1] Karolinska Inst, CLINTEC, Dept Med Epidemiol & Biostat, SE-17177 Stockholm, Sweden
[2] Wake Forest Univ, Bowman Gray Sch Med, Ctr Canc Genom, Winston Salem, NC 27157 USA
[3] Wake Forest Univ, Bowman Gray Sch Med, Ctr Human Genom, Winston Salem, NC 27157 USA
[4] Johns Hopkins Med Inst, Dept Urol, Baltimore, MD 21287 USA
[5] Wake Forest Univ, Bowman Gray Sch Med, Dept Biostat Sci, Winston Salem, NC 27157 USA
[6] Umea Univ Hosp, Dept Surg & Perioperat Sci, SE-90787 Umea, Sweden
[7] Harvard Univ, Sch Publ Hlth, Dept Epidemiol, Boston, MA 02115 USA
[8] Karolinska Inst, CLINTEC, Ctr Oncol, SE-17177 Stockholm, Sweden
[9] Orebro Univ Hosp, Dept Urol, SE-70182 Orebro, Sweden
[10] Translat Genom Res Inst, Phoenix, AZ 85004 USA
基金
瑞典研究理事会;
关键词
D O I
10.1038/ng.214
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We carried out a fine-mapping study in the HNF1B gene at 17q12 in two study populations and identified a second locus associated with prostate cancer risk, similar to 26 kb centromeric to the first known locus (rs4430796); these loci are separated by a recombination hot spot. We confirmed the association with a SNP in the second locus (rs11649743) in five additional populations, with P = 1.7 x 10(-9) for an allelic test of the seven studies combined. The association at each SNP remained significant after adjustment for the other SNP.
引用
收藏
页码:1153 / 1155
页数:3
相关论文
共 15 条
[1]   A common variant associated with prostate cancer in European and African populations [J].
Amundadottir, Laufey T. ;
Sulem, Patrick ;
Gudmundsson, Julius ;
Helgason, Agnar ;
Baker, Adam ;
Agnarsson, Bjarni A. ;
Sigurdsson, Asgeir ;
Benediktsdottir, Kristrun R. ;
Cazier, Jean-Baptiste ;
Sainz, Jesus ;
Jakobsdottir, Margret ;
Kostic, Jelena ;
Magnusdottir, Droplaug N. ;
Ghosh, Shyamali ;
Agnarsson, Kari ;
Birgisdottir, Birgitta ;
Le Roux, Louise ;
Olafsdottir, Adalheidur ;
Blondal, Thorarinn ;
Andresdottir, Margret ;
Gretarsdottir, Olafia Svandis ;
Bergthorsson, Jon T. ;
Gudbjartsson, Daniel ;
Gylfason, Arnaldur ;
Thorleifsson, Gudmar ;
Manolescu, Andrei ;
Kristjansson, Kristleifur ;
Geirsson, Gudmundur ;
Isaksson, Helgi ;
Douglas, Julie ;
Johansson, Jan-Erik ;
Balter, Katarina ;
Wiklund, Fredrik ;
Montie, James E. ;
Yu, Xiaoying ;
Suarez, Brian K. ;
Ober, Carole ;
Cooney, Kathleen A. ;
Gronberg, Henrik ;
Catalona, William J. ;
Einarsson, Gudmundur V. ;
Barkardottir, Rosa B. ;
Gulcher, Jeffrey R. ;
Kong, Augustine ;
Thorsteinsdottir, Unnur ;
Stefansson, Kari .
NATURE GENETICS, 2006, 38 (06) :652-658
[2]   Haploview: analysis and visualization of LD and haplotype maps [J].
Barrett, JC ;
Fry, B ;
Maller, J ;
Daly, MJ .
BIOINFORMATICS, 2005, 21 (02) :263-265
[3]   Multiple newly identified loci associated with prostate cancer susceptibility [J].
Eeles, Rosalind A. ;
Kote-Jarai, Zsofia ;
Giles, Graham G. ;
Al Olama, Ali Amin ;
Guy, Michelle ;
Jugurnauth, Sarah K. ;
Mulholland, Shani ;
Leongamornlert, Daniel A. ;
Edwards, Stephen M. ;
Morrison, Jonathan ;
Field, Helen I. ;
Southey, Melissa C. ;
Severi, Gianluca ;
Donovan, Jenny L. ;
Hamdy, Freddie C. ;
Dearnaley, David P. ;
Muir, Kenneth R. ;
Smith, Charmaine ;
Bagnato, Melisa ;
Ardern-Jones, Audrey T. ;
Hall, Amanda L. ;
O'Brien, Lynne T. ;
Gehr-Swain, Beatrice N. ;
Wilkinson, Rosemary A. ;
Cox, Angie ;
Lewis, Sarah ;
Brown, Paul M. ;
Jhavar, Sameer G. ;
Tymrakiewicz, Malgorzata ;
Lophatananon, Artitaya ;
Bryant, Sarah L. ;
Horwich, Alan ;
Huddart, Robert A. ;
Khoo, Vincent S. ;
Parker, Christopher C. ;
Woodhouse, Christopher J. ;
Thompson, Alan ;
Christmas, Tim ;
Ogden, Chris ;
Fisher, Cyril ;
Jamieson, Charles ;
Cooper, Colin S. ;
English, Dallas R. ;
Hopper, John L. ;
Neal, David E. ;
Easton, Douglas F. .
NATURE GENETICS, 2008, 40 (03) :316-321
[4]   SequenceLDhot: detecting recombination hotspots [J].
Fearnhead, Paul .
BIOINFORMATICS, 2006, 22 (24) :3061-3066
[5]   Admixture mapping identifies 8q24 as a prostate cancer risk locus in African-American men [J].
Freedman, Matthew L. ;
Haiman, Christopher A. ;
Patterson, Nick ;
McDonald, Gavin J. ;
Tandon, Arti ;
Waliszewska, Alicja ;
Penney, Kathryn ;
Steen, Robert G. ;
Ardlie, Kristin ;
John, Esther M. ;
Clakley-Girvan, Ingrid ;
Whitternore, Alice S. ;
Cooney, Kathleen A. ;
Ingles, Sue A. ;
Altshuler, David ;
Henderson, Brian E. ;
Reich, David .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (38) :14068-14073
[6]   The structure of haplotype blocks in the human genome [J].
Gabriel, SB ;
Schaffner, SF ;
Nguyen, H ;
Moore, JM ;
Roy, J ;
Blumenstiel, B ;
Higgins, J ;
DeFelice, M ;
Lochner, A ;
Faggart, M ;
Liu-Cordero, SN ;
Rotimi, C ;
Adeyemo, A ;
Cooper, R ;
Ward, R ;
Lander, ES ;
Daly, MJ ;
Altshuler, D .
SCIENCE, 2002, 296 (5576) :2225-2229
[7]   Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes [J].
Gudmundsson, Julius ;
Sulem, Patrick ;
Steinthorsdottir, Valgerdur ;
Bergthorsson, Jon T. ;
Thorleifsson, Gudmar ;
Manolescu, Andrei ;
Rafnar, Thorunn ;
Gudbjartsson, Daniel ;
Agnarsson, Bjarni A. ;
Baker, Adam ;
Sigurdsson, Asgeir ;
Benediktsdottir, Kristrun R. ;
Jakobsdottir, Margret ;
Blondal, Thorarinn ;
Stacey, Simon N. ;
Helgason, Agnar ;
Gunnarsdottir, Steinunn ;
Olafsdottir, Adalheidur ;
Kristinsson, Kari T. ;
Birgisdottir, Birgitta ;
Ghosh, Shyamali ;
Thorlacius, Steinunn ;
Magnusdottir, Dana ;
Stefansdottir, Gerdur ;
Kristjansson, Kristleifur ;
Bagger, Yu ;
Wilensky, Robert L. ;
Reilly, Muredach P. ;
Morris, Andrew D. ;
Kimber, Charlotte H. ;
Adeyemo, Adebowale ;
Chen, Yuanxiu ;
Zhou, Jie ;
So, Wing-Yee ;
Tong, Peter C. Y. ;
Ng, Maggie C. Y. ;
Hansen, Torben ;
Andersen, Gitte ;
Borch-Johnsen, Knut ;
Jorgensen, Torben ;
Tres, Alejandro ;
Fuertes, Fernando ;
Ruiz-Echarri, Manuel ;
Asin, Laura ;
Saez, Berta ;
van Boven, Erica ;
Klaver, Siem ;
Swinkels, Dorine W. ;
Aben, Katja K. ;
Graif, Theresa .
NATURE GENETICS, 2007, 39 (08) :977-983
[8]   Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24 [J].
Gudmundsson, Julius ;
Sulem, Patrick ;
Manolescu, Andrei ;
Amundadottir, Laufey T. ;
Gudbjartsson, Daniel ;
Helgason, Agnar ;
Rafnar, Thorunn ;
Bergthorsson, Jon T. ;
Agnarsson, Bjarni A. ;
Baker, Adam ;
Sigurdsson, Asgeir ;
Benediktsdottir, Kristrun R. ;
Jakobsdottir, Margret ;
Xu, Jianfeng ;
Blondal, Thorarinn ;
Kostic, Jelena ;
Sun, Jielin ;
Ghosh, Shyamali ;
Stacey, Simon N. ;
Mouy, Magali ;
Saemundsdottir, Jona ;
Backman, Valgerdur M. ;
Kristjansson, Kristleifur ;
Tres, Alejandro ;
Partin, Alan W. ;
Albers-Akkers, Marjo T. ;
Marcos, Javier Godino-Ivan ;
Walsh, Patrick C. ;
Swinkels, Dorine W. ;
Navarrete, Sebastian ;
Isaacs, Sarah D. ;
Aben, Katja K. ;
Graif, Theresa ;
Cashy, John ;
Ruiz-Echarri, Manuel ;
Wiley, Kathleen E. ;
Suarez, Brian K. ;
Witjes, J. Alfred ;
Frigge, Mike ;
Ober, Carole ;
Jonsson, Eirikur ;
Einarsson, Gudmundur V. ;
Mayordomo, Jose I. ;
Kiemeney, Lambertus A. ;
Isaacs, William B. ;
Catalona, William J. ;
Barkardottir, Rosa B. ;
Gulcher, Jeffrey R. ;
Thorsteinsdottir, Unnur ;
Kong, Augustine .
NATURE GENETICS, 2007, 39 (05) :631-637
[9]   Multiple regions within 8q24 independently affect risk for prostate cancer [J].
Haiman, Christopher A. ;
Patterson, Nick ;
Freedman, Matthew L. ;
Myers, Simon R. ;
Pike, Malcolm C. ;
Waliszewska, Alicja ;
Neubauer, Julie ;
Tandon, Arti ;
Schirmer, Christine ;
McDonald, Gavin J. ;
Greenway, Steven C. ;
Stram, Daniel O. ;
Le Marchand, Loic ;
Kolonel, Laurence N. ;
Frasco, Melissa ;
Wong, David ;
Pooler, Loreall C. ;
Ardlie, Kristin ;
Oakley-Girvan, Ingrid ;
Whittemore, Alice S. ;
Cooney, Kathleen A. ;
John, Esther M. ;
Ingles, Sue A. ;
Altshuler, David ;
Henderson, Brian E. ;
Reich, David .
NATURE GENETICS, 2007, 39 (05) :638-644
[10]   A new multipoint method for genome-wide association studies by imputation of genotypes [J].
Marchini, Jonathan ;
Howie, Bryan ;
Myers, Simon ;
McVean, Gil ;
Donnelly, Peter .
NATURE GENETICS, 2007, 39 (07) :906-913