Endogenous Lentiviral Elements in the Weasel Family (Mustelidae)

被引:32
作者
Han, Guan-Zhu [1 ]
Worobey, Michael [1 ]
机构
[1] Univ Arizona, Dept Ecol & Evolutionary Biol, Tucson, AZ 85721 USA
关键词
weasel; lentivirus; endogenous retrovirus; PHYLOGENIES; RETROVIRUS; INFERENCE; PRIMATE;
D O I
10.1093/molbev/mss126
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Endogenous retroviruses provide molecular fossils for studying the ancient evolutionary history of retroviruses. Here, we report our independent discovery and analysis of endogenous lentiviral insertions (Mustelidae endogenous lentivirus [MELV]) within the genomes of weasel family (Mustelidae). Genome-scale screening identified MELV elements in the domestic ferret (Mustela putorius furo) genome (MELVmpf). MELVmpf exhibits a typical lentiviral genomic organization. Phylogenetic analyses position MELVmpf basal to either primate lentiviruses or feline immunodeficiency virus. Moreover, we verified the presence of MELV insertions in the genomes of several species of the Lutrinae and Mustelinae subfamilies but not the Martinae subfamily, suggesting that the invasion of MELV into the Mustelidae genomes likely took place between 8.8 and 11.8 Ma. The discovery of MELV in weasel genomes extends the host range of lentiviruses to the Caniformia (order Carnivora) and provides important insights into the prehistoric diversity of lentiviruses.
引用
收藏
页码:2905 / 2908
页数:4
相关论文
共 19 条
[1]   Issues to consider for preparing ferrets as research subjects in the laboratory [J].
Ball, Roberta Scipioni .
ILAR JOURNAL, 2006, 47 (04) :348-357
[2]   Endogenous Lentiviruses in the Ferret Genome [J].
Cui, Jie ;
Holmes, Edward C. .
JOURNAL OF VIROLOGY, 2012, 86 (06) :3383-3385
[3]   rtREV: An amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny [J].
Dimmic, MW ;
Rest, JS ;
Mindell, DP ;
Goldstein, RA .
JOURNAL OF MOLECULAR EVOLUTION, 2002, 55 (01) :65-73
[4]   Relaxed phylogenetics and dating with confidence [J].
Drummond, Alexei J. ;
Ho, Simon Y. W. ;
Phillips, Matthew J. ;
Rambaut, Andrew .
PLOS BIOLOGY, 2006, 4 (05) :699-710
[5]   MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].
Edgar, RC .
NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797
[6]   Productive Replication and Evolution of HIV-1 in Ferret Cells [J].
Fadel, Hind J. ;
Saenz, Dyana T. ;
Guevara, Rebekah ;
von Messling, Veronika ;
Peretz, Mary ;
Poeschla, Eric M. .
JOURNAL OF VIROLOGY, 2012, 86 (04) :2312-2322
[7]   Molecular phylogeny of the Carnivora (Mammalia): Assessing the impact of increased sampling on resolving enigmatic relationships [J].
Flynn, JJ ;
Finarelli, JA ;
Zehr, S ;
Hsu, J ;
Nedbal, MA .
SYSTEMATIC BIOLOGY, 2005, 54 (02) :317-337
[8]   A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution [J].
Gifford, Robert J. ;
Katzourakis, Aris ;
Tristem, Michael ;
Pybus, Oliver G. ;
Winters, Mark ;
Shafer, Robert W. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (51) :20362-20367
[9]   Parallel Germline Infiltration of a Lentivirus in Two Malagasy Lemurs [J].
Gilbert, Clement ;
Maxfield, David G. ;
Goodman, Steven M. ;
Feschotte, Cedric .
PLOS GENETICS, 2009, 5 (03)
[10]   New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 [J].
Guindon, Stephane ;
Dufayard, Jean-Francois ;
Lefort, Vincent ;
Anisimova, Maria ;
Hordijk, Wim ;
Gascuel, Olivier .
SYSTEMATIC BIOLOGY, 2010, 59 (03) :307-321