Purpose: The purposes of this study were to assess sources of variation in the distribution of nitroimidazole-labeled hypoxic cells in canine tumors and to quantify the reliability of estimating overall nitroimidazole-labeled area fraction from biopsies. Methods and Materials: Hypoxic cells were labeled in 24 canine tumors by immunostaining of the nitroimidazole hypoxia marker CCI-103F, In tumors with a volume <100cm(3), each cubic centimeter of tumor was examined; in larger tumors 100 randomly selected 1 cm(3) samples were examined, These data were used to estimate the overall CCI-103F-labeled area fraction in the tumor, A variance components model was used to quantify intertumoral, intratumoral, and within slide (residual) sources of variation, The ability to estimate intratumoral CCI-103F-labeled area fraction based on information obtained from biopsies was assessed by randomly selecting two or four samples from the dataset for each tumor and comparing the mean CCI-103F-labeled area fraction from this limited sample to the labeled area fraction based on each cubic centimeter; this simulation process was repeated 1000 times. Results: Intratumoral (27% of total) and intertumoral (30% of total) variation in CCI-103F-labeIed area fraction were similar, Residual variation (variation at the microscopic level) accounted for 43% of total variation in CCI-103F labeling, Intratumoral variation in labeling decreased as the intratumoral CCI-103F mean labeled area fraction decreased, The accuracy of estimating the intratumoral CCI-103F-labeled area fraction in a tumor from limited sampling increased as the number of samples increased or the intratumoral labeled area fraction decreased, When four random samples were used to estimate overall CCI-103F-labeled area fraction in the tumor, estimates from approximately 90% of the 1000 simulations were within 0.10 of the intratumoral CCI-103F-labeled area fraction, Classifying a minimally labeled tumor as unlabeled based on limited sampling was unlikely. Conclusion: Despite intratumor variation, acceptable estimates of nitroimidazole-labeled cells in a tumor may be obtained from a clinically feasible number of biopsies. (C) 1997 Elsevier Science Inc.