Drug-target network in myocardial infarction reveals multiple side effects of unrelated drugs

被引:66
作者
Azuaje, Francisco J. [1 ]
Zhang, Lu [1 ]
Devaux, Yvan [1 ]
Wagner, Daniel R. [1 ,2 ]
机构
[1] Publ Res Ctr Hlth CRP Sante, Cardiovasc Res Lab, L-1150 Luxembourg, Luxembourg
[2] Ctr Hosp, Div Cardiol, L-1210 Luxembourg, Luxembourg
关键词
HEART-FAILURE; DATABASE; SYSTEMS; RISK; TOOL; RNA;
D O I
10.1038/srep00052
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
The systems-level characterization of drug-target associations in myocardial infarction (MI) has not been reported to date. We report a computational approach that combines different sources of drug and protein interaction information to assemble the myocardial infarction drug-target interactome network (My-DTome). My-DTome comprises approved and other drugs interlinked in a single, highly-connected network with modular organization. We show that approved and other drugs may both be highly connected and represent network bottlenecks. This highlights influential roles for such drugs on seemingly unrelated targets and pathways via direct and indirect interactions. My-DTome modules are associated with relevant molecular processes and pathways. We find evidence that these modules may be regulated by microRNAs with potential therapeutic roles in MI. Different drugs can jointly impact a module. We provide systemic insights into cardiovascular effects of non-cardiovascular drugs. My-DTome provides the basis for an alternative approach to investigate new targets and multidrug treatment in MI.
引用
收藏
页数:10
相关论文
共 35 条
[1]
Appetite-suppressant drugs and the risk of primary pulmonary hypertension [J].
Abenhaim, L ;
Moride, Y ;
Brenot, F ;
Rich, S ;
Benichou, J ;
Kurz, X ;
Higenbottam, T ;
Oakley, C ;
Wouters, E ;
Aubier, M ;
Simonneau, G ;
Begaud, B .
NEW ENGLAND JOURNAL OF MEDICINE, 1996, 335 (09) :609-616
[2]
Babelomics:: advanced functional profiling of transcriptomics, proteomics and genomics experiments [J].
Al-Shahrour, Fatima ;
Carbonell, Jose ;
Minguez, Pablo ;
Goetz, Stefan ;
Conesa, Ana ;
Tarrraga, Joaquin ;
Medina, Ignacio ;
Alloza, Eva ;
Montaner, David ;
Dopazo, Joaquin .
NUCLEIC ACIDS RESEARCH, 2008, 36 :W341-W346
[3]
The IntAct molecular interaction database in 2010 [J].
Aranda, B. ;
Achuthan, P. ;
Alam-Faruque, Y. ;
Armean, I. ;
Bridge, A. ;
Derow, C. ;
Feuermann, M. ;
Ghanbarian, A. T. ;
Kerrien, S. ;
Khadake, J. ;
Kerssemakers, J. ;
Leroy, C. ;
Menden, M. ;
Michaut, M. ;
Montecchi-Palazzi, L. ;
Neuhauser, S. N. ;
Orchard, S. ;
Perreau, V. ;
Roechert, B. ;
van Eijk, K. ;
Hermjakob, H. .
NUCLEIC ACIDS RESEARCH, 2010, 38 :D525-D531
[4]
Network Systems Biology for Drug Discovery [J].
Arrell, D. K. ;
Terzic, A. .
CLINICAL PHARMACOLOGY & THERAPEUTICS, 2010, 88 (01) :120-125
[5]
Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[6]
Computing topological parameters of biological networks [J].
Assenov, Yassen ;
Ramirez, Fidel ;
Schelhorn, Sven-Eric ;
Lengauer, Thomas ;
Albrecht, Mario .
BIOINFORMATICS, 2008, 24 (02) :282-284
[7]
Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network [J].
Azuaje, Francisco ;
Devaux, Yvan ;
Wagner, Daniel R. .
BMC SYSTEMS BIOLOGY, 2010, 4
[8]
Clopidogrel-Drug Interactions [J].
Bates, Eric R. ;
Lau, Wei C. ;
Angiolillo, Dominick J. .
JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY, 2011, 57 (11) :1251-1263
[9]
MicroRNAs miR-1, miR-133a, miR-133b and miR-208 Are Dysregulated in Human Myocardial Infarction [J].
Bostjancic, Emanuela ;
Zidar, Nina ;
Stajer, Dusan ;
Glavac, Damjan .
CARDIOLOGY, 2010, 115 (03) :163-169
[10]
Drug scandal exposes French regulators to public ire [J].
Casassus, Barbara .
NATURE MEDICINE, 2011, 17 (02) :144-144