Genotype versus phenotype in the circumscription of bacterial species:: the case of Pseudomonas stutzeri and Pseudomonas chloritidismutans

被引:25
作者
Cladera, A [1 ]
García-Valdés, E [1 ]
Lalucat, J [1 ]
机构
[1] CSIC, UIB, Inst Mediterrani Estudis Avancats, Palma de Mallorca, Spain
关键词
P; stutzeri; chloritidismutans; denitrification; multilocus sequence analysis (MLSA);
D O I
10.1007/s00203-005-0052-x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The phenotypic characteristic of strain AW-1(T)of Pseudomonas chloritidismutans that is most relevant from the taxonomic point of view appears to be the capacity of growth under anaerobic conditions using chlorate as electron acceptor. This property is not restricted to this species only within the genus Pseudomonas, since it is also present in strains of genomovars 1 or 5, and 3 of Pseudomonas stutzeri. P. chloritidismutans has been described as a non-denitrifying species, but the isolation of variants that are able to grow anaerobically in the presence of nitrate is possible after subcultivation under selective conditions. The subdivision of P. stutzeri into a number of species on the basis of these characteristics does not help to clarify the phylogenetic relationships among the members of an otherwise coherent group of strains, and the considerations presented in this communication support the reclassification of the new species name P. chloritidismutans, which in our opinion, should be considered as a Junior name of P. stutzeri. A multilocus sequence analysis, together with a phenotypic analysis of the anaerobic oxidative metabolism, gives new insights into the phylogeny and evolution of the species.
引用
收藏
页码:353 / 361
页数:9
相关论文
共 34 条
[11]   Polyphasic characterization of Pseudomonas stutzeri CLN100 which simultaneously degrades chloro- and methylaromatics:: A new genomovar within the species [J].
García-Valdés, E ;
Castillo, MM ;
Bennasar, A ;
Guasp, C ;
Cladera, AM ;
Bosch, R ;
Engesser, KH ;
Lalucat, J .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2003, 26 (03) :390-403
[12]   Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species [J].
Guasp, C ;
Moore, ERB ;
Lalucat, J ;
Bennasar, A .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :1629-1639
[13]   IDENTIFICATION AND LOCATION OF L-GLYCERATE, AN UNUSUAL ACYL SUBSTITUENT IN GELLAN GUM [J].
KUO, MS ;
MORT, AJ ;
DELL, A .
CARBOHYDRATE RESEARCH, 1986, 156 :173-187
[14]   Intraspecies variation in bacterial genomes: the need for a species genome concept [J].
Lan, RT ;
Reeves, PR .
TRENDS IN MICROBIOLOGY, 2000, 8 (09) :396-401
[15]   Kinetics of perchlorate- and chlorate-respiring bacteria [J].
Logan, BE ;
Zhang, HS ;
Mulvaney, P ;
Milner, MG ;
Head, IM ;
Unz, RF .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (06) :2499-2506
[16]   Codon usage tabulated from international DNA sequence databases: status for the year 2000 [J].
Nakamura, Y ;
Gojobori, T ;
Ikemura, T .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :292-292
[17]   SOME PROPERTIES AND TAXONOMIC SUBDIVISIONS OF GENUS PSEUDOMONAS [J].
PALLERONI, NJ ;
DOUDOROFF, M .
ANNUAL REVIEW OF PHYTOPATHOLOGY, 1972, 10 :73-+
[18]  
Palleroni NJ., 1984, BERGEYS MANUAL SYSTE, P141, DOI DOI 10.1099/00207713-35-3-408
[19]   Clonal population structure of Pseudomonas stutzeri, a species with exceptional genetic diversity [J].
Rius, N ;
Fusté, MC ;
Guasp, C ;
Lalucat, J ;
Lorén, JG .
JOURNAL OF BACTERIOLOGY, 2001, 183 (02) :736-744
[20]   GENOTYPIC AND PHENOTYPIC DIVERSITY OF PSEUDOMONAS-STUTZERI [J].
ROSSELLO, R ;
GARCIAVALDES, E ;
LALUCAT, J ;
URSING, J .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 1991, 14 (02) :150-157