Redundancy, antiredundancy, and the robustness of genomes

被引:178
作者
Krakauer, DC
Plotkin, JB
机构
[1] Santa Fe Inst, Santa Fe, NM 87501 USA
[2] Inst Adv Study, Princeton, NJ 08540 USA
关键词
genomic stability; mutation selection; canalization; fitness landscape; quasispecies;
D O I
10.1073/pnas.032668599
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Genetic mutations that lead to undetectable or minimal changes in phenotypes are said to reveal redundant functions. Redundancy is common among phenotypes of higher organisms that experience low mutation rates and small population sizes. Redundancy is less common among organisms with high mutation rates and large populations, or among the rapidly dividing cells of multicellular organisms. In these cases, one even observes the opposite tendency: a hypersensitivity to mutation, which we refer to as antiredundancy. In this paper we analyze the evolutionary dynamics of redundancy and antiredundancy. Assuming a cost of redundancy, we find that large populations will evolve antiredundant mechanisms for removing mutants and thereby bolster the robustness of wild-type genomes; whereas small populations will evolve redundancy to ensure that all individuals have a high chance of survival. We propose that antiredundancy is as important for developmental robustness as redundancy, and is an essential mechanism for ensuring tissue-level stability in complex multicellular organisms. We suggest that antiredundancy deserves greater attention in relation to cancer, mitochondrial disease, and virus infection.
引用
收藏
页码:1405 / 1409
页数:5
相关论文
共 57 条
[51]   Crystal structure of a class I α1,2-mannosidase involved in N-glycan processing and endoplasmic reticulum quality control [J].
Vallée, F ;
Lipari, F ;
Yip, P ;
Sleno, B ;
Herscovics, A ;
Howell, PL .
EMBO JOURNAL, 2000, 19 (04) :581-588
[52]   Robustness against mutations in genetic networks of yeast [J].
Wagner, A .
NATURE GENETICS, 2000, 24 (04) :355-361
[53]   Redundant gene functions and natural selection [J].
Wagner, A .
JOURNAL OF EVOLUTIONARY BIOLOGY, 1999, 12 (01) :1-16
[54]   MITOTIC CHECKPOINT GENES IN BUDDING YEAST AND THE DEPENDENCE OF MITOSIS ON DNA-REPLICATION AND REPAIR [J].
WEINERT, TA ;
KISER, GL ;
HARTWELL, LH .
GENES & DEVELOPMENT, 1994, 8 (06) :652-665
[55]   Evolution of digital organisms at high mutation rates leads to survival of the flattest [J].
Wilke, CO ;
Wang, JL ;
Ofria, C ;
Lenski, RE ;
Adami, C .
NATURE, 2001, 412 (6844) :331-333
[56]  
WILLIAMSON AR, 1975, FED PROC, V34, P28
[57]   Population evolution on a multiplicative single-peak fitness landscape [J].
Woodcock, G ;
Higgs, PG .
JOURNAL OF THEORETICAL BIOLOGY, 1996, 179 (01) :61-73