RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

被引：933

作者：

Burley, Stephen K. ^{[1
,2
,3
,4
]}

Berman, Helen M. ^{[1
,4
]}

Bhikadiya, Charmi ^{[1
,4
]}

Bi, Chunxiao ^{[2
]}

Chen, Li ^{[1
,4
]}

Di Costanzo, Luigi ^{[1
,4
]}

Christie, Cole ^{[2
]}

Dalenberg, Ken ^{[4
]}

Duarte, Jose M. ^{[2
]}

Dutta, Shuchismita ^{[1
,4
]}

Feng, Zukang ^{[1
,4
]}

Ghosh, Sutapa ^{[1
,4
]}

Goodsell, David S. ^{[1
,4
,5
]}

Green, Rachel K. ^{[1
,4
]}

Guranovic, Vladimir ^{[1
,4
]}

Guzenko, Dmytro ^{[2
]}

Hudson, Brian P. ^{[1
,4
]}

Kalro, Tara ^{[2
,6
]}

Liang, Yuhe ^{[1
,4
]}

Lowe, Robert ^{[1
,4
]}

Namkoong, Harry ^{[4
]}

Peisach, Ezra ^{[1
,4
]}

Periskova, Irina ^{[1
,4
]}

Prlic, Andreas ^{[2
,7
]}

Randle, Chris ^{[2
]}

Rose, Alexander ^{[2
]}

Rose, Peter ^{[2
,7
]}

Sala, Raul ^{[1
,8
]}

Sekharan, Monica ^{[1
,4
]}

Shao, Chenghua ^{[1
,4
]}

Tan, Lihua ^{[1
]}

Tao, Yi-Ping ^{[1
,4
]}

Valasatava, Yana ^{[2
]}

Voigt, Maria ^{[1
,4
]}

Westbrook, John ^{[1
,4
]}

Woo, Jesse ^{[2
,9
]}

Yang, Huanwang ^{[1
,10
]}

Young, Jasmine ^{[1
,4
]}

Zhuravleva, Marina ^{[1
,4
]}

Zardecki, Christine ^{[1
,4
]}

机构：

[1] Rutgers State Univ, Res Collaboratory Struct Bioinformat Prot Data Ba, Piscataway, NJ 08854 USA

[2] Univ Calif San Diego, Res Collaboratory Struct Bioinformat Prot Data Ba, San Diego Supercomp Ctr, La Jolla, CA 92093 USA

[3] Rutgers State Univ, Rutgers Canc Inst New Jersey, New Brunswick, NJ 08903 USA

[4] Rutgers State Univ, Inst Quantitat Biomed, Piscataway, NJ 08854 USA

[5] Scripps Res Inst, La Jolla, CA 92037 USA

[6] ResMed, San Diego, CA 92123 USA

[7] Univ Calif San Diego, Struct Bioinformat Lab, San Diego Supercomp Ctr, La Jolla, CA 92093 USA

[8] Rutgers State Univ, Off Informat Technol, Piscataway, NJ 08854 USA

[9] Movemedical, San Diego, CA 92127 USA

[10] Comcast, Philadelphia, PA 19103 USA

来源：

NUCLEIC ACIDS RESEARCH | 2019年 / 47卷 / D1期

基金：

美国国家科学基金会;

关键词：

VALIDATION; DEPOSITION; RESOURCE; SYSTEM; GENE; VIEW;

D O I：

10.1093/nar/gky1004

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

070307 [化学生物学]; 071010 [生物化学与分子生物学];

摘要：

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, rcsb.org), the US data center for the global PDB archive, serves thousands of Data Depositors in the Americas and Oceania and makes 3D macromolecular structure data available at no charge and without usage restrictions to more than 1 million rcsb.org Users worldwide and 600 000 pdb101.rcsb.org education-focused Users around the globe. PDB Data Depositors include structural biologists using macromolecular crystallography, nuclear magnetic resonance spectroscopy and 3D electron microscopy. PDB Data Consumers include researchers, educators and students studying Fundamental Biology, Biomedicine, Biotechnology and Energy. Recent reorganization of RCSB PDB activities into four integrated, interdependent services is described in detail, together with tools and resources added over the past 2years to RCSB PDB web portals in support of a Structural View of Biology.'

引用

页码：D464 / D474

页数：11

共 56 条

[1]

[Anonymous], 2017, GENET ENG BIOTECHNOL, V37, P30

[2]

Bank PD., 1971, Nature New Biol, V233, P223, DOI [10.1038/newbio233223b0, DOI 10.1038/NEWBIO233223B0]

[3]

Basner J., 2017, PROTEIN DATA BANK, DOI [10.2210/rcsbpdb/pdb-cit-anal-2017, DOI 10.2210/RCSBPDB/PDB-CIT-ANAL-2017]

[4]

Announcing the worldwide Protein Data Bank [J].

Berman, H ;

Henrick, K ;

Nakamura, H .

NATURE STRUCTURAL BIOLOGY, 2003, 10 (12) :980-980

[5]

The Protein Data Bank: a historical perspective [J].

Berman, Helen M. .

ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2008, 64 :88-95

[6]

The Protein Data Bank [J].

Berman, HM ;

Westbrook, J ;

Feng, Z ;

Gilliland, G ;

Bhat, TN ;

Weissig, H ;

Shindyalov, IN ;

Bourne, PE .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242

[7]

The PDB data uniformity project [J].

Bhat, TN ;

Bourne, P ;

Feng, ZK ;

Gilliland, G ;

Jain, S ;

Ravichandran, V ;

Schneider, B ;

Schneider, K ;

Thanki, N ;

Weissig, H ;

Westbrook, J ;

Berman, HM .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :214-218

[8]

Automated evaluation of quaternary structures from protein crystals [J].

Bliven, Spencer ;

Lafita, Aleix ;

Parker, Althea ;

Capitani, Guido ;

Duarte, Jose M. .

PLOS COMPUTATIONAL BIOLOGY, 2018, 14 (04)

[9]

Clinical efficacy of a RAF inhibitor needs broad target blockade in BRAF-mutant melanoma [J].

Bollag, Gideon ;

Hirth, Peter ;

Tsai, James ;

Zhang, Jiazhong ;

Ibrahim, Prabha N. ;

Cho, Hanna ;

Spevak, Wayne ;

Zhang, Chao ;

Zhang, Ying ;

Habets, Gaston ;

Burton, ElizabethA. ;

Wong, Bernice ;

Tsang, Garson ;

West, Brian L. ;

Powell, Ben ;

Shellooe, Rafe ;

Marimuthu, Adhirai ;

Nguyen, Hoa ;

Zhang, Kam Y. J. ;

Artis, Dean R. ;

Schlessinger, Joseph ;

Su, Fei ;

Higgins, Brian ;

Iyer, Raman ;

D'Andrea, Kurt ;

Koehler, Astrid ;

Stumm, Michael ;

Lin, Paul S. ;

Lee, Richard J. ;

Grippo, Joseph ;

Puzanov, Igor ;

Kim, Kevin B. ;

Ribas, Antoni ;

McArthur, Grant A. ;

Sosman, Jeffrey A. ;

Chapman, Paul B. ;

Flaherty, Keith T. ;

Xu, Xiaowei ;

Nathanson, Katherine L. ;

Nolop, Keith .

NATURE, 2010, 467 (7315) :596-599

[10]

The distribution and query systems of the RCSB protein data bank [J].

Bourne, PE ;

Addess, KJ ;

Bluhm, WF ;

Chen, L ;

Deshpande, N ;

Feng, ZK ;

Fleri, W ;

Green, R ;

Merino-Ott, JC ;

Townsend-Merino, W ;

Weissig, H ;

Westbrook, J ;

Berman, HM .

NUCLEIC ACIDS RESEARCH, 2004, 32 :D223-D225

← 1 2 3 4 5 6 →