共 35 条
Generation of an shRNAi expression library against the whole human transcripts
被引:35
作者:

Miyagishi, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Sch Engn, Dept Chem & Biotechnol, Tokyo 1138656, Japan

Matsumoto, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Sch Engn, Dept Chem & Biotechnol, Tokyo 1138656, Japan

Taira, K
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Tokyo, Sch Engn, Dept Chem & Biotechnol, Tokyo 1138656, Japan Univ Tokyo, Sch Engn, Dept Chem & Biotechnol, Tokyo 1138656, Japan
机构:
[1] Univ Tokyo, Sch Engn, Dept Chem & Biotechnol, Tokyo 1138656, Japan
[2] Natl Inst Adv Ind Sci & Technol, Gene Funct Res Ctr, AIST, Tsukuba, Ibaraki 3058562, Japan
[3] Univ Tokyo, Grad Sch Med, Dept Cardiovasc Med, Tokyo 1130033, Japan
关键词:
RNA interference;
U6;
promoter;
algorithm;
RNAi library;
D O I:
10.1016/j.virusres.2004.01.022
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
RNA interference is a phenomenon in which expression of an individual gene can be specifically silenced by introducing a double-stranded RNA. homologous to the gene, and is receiving attention as a powerful tool for reverse genetics in the post-genome era. Throughout our Current research to generate an siRNA expression library for the whole human genome, we face many technical difficulties. We present here the strategies for overcoming some of the difficulties, including the development of genetically stable and highly active siRNA expression vectors, the selection procedure of the favorable target sites, and the efficient and low cost procedure for constructing an siRNA expression library. Furthermore. we demonstrate that the screening using the constructed siRNA-expression library indeed works, by evaluating siRNA-expression library against apoptosis-related genes. (C) 2004 Published by Elsevier B.V.
引用
收藏
页码:117 / 124
页数:8
相关论文
共 35 条
[1]
Identification of Id4 as a regulator of BRCA1 expression by using a ribozyme-library-based inverse genomics approach
[J].
Beger, C
;
Pierce, LN
;
Krüger, M
;
Marcusson, EG
;
Robbins, JM
;
Welcsh, P
;
Welch, PJ
;
Welte, K
;
King, MC
;
Barber, JR
;
Wong-Staal, F
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2001, 98 (01)
:130-135

Beger, C
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Pierce, LN
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Krüger, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Marcusson, EG
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Robbins, JM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Welcsh, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Welch, PJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Welte, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

King, MC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Barber, JR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

Wong-Staal, F
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA
[2]
A system for stable expression of short interfering RNAs in mammalian cells
[J].
Brummelkamp, TR
;
Bernards, R
;
Agami, R
.
SCIENCE,
2002, 296 (5567)
:550-553

Brummelkamp, TR
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, Div Mol Carcinogenesis, NL-1066 CX Amsterdam, Netherlands

Bernards, R
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, Div Mol Carcinogenesis, NL-1066 CX Amsterdam, Netherlands

Agami, R
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Canc Inst, Div Mol Carcinogenesis, NL-1066 CX Amsterdam, Netherlands
[3]
Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems
[J].
Caplen, NJ
;
Parrish, S
;
Imani, F
;
Fire, A
;
Morgan, RA
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2001, 98 (17)
:9742-9747

Caplen, NJ
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, Med Genet Branch, NIH, Bethesda, MD 20892 USA

Parrish, S
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, Med Genet Branch, NIH, Bethesda, MD 20892 USA

Imani, F
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, Med Genet Branch, NIH, Bethesda, MD 20892 USA

Fire, A
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, Med Genet Branch, NIH, Bethesda, MD 20892 USA

Morgan, RA
论文数: 0 引用数: 0
h-index: 0
机构: NHGRI, Med Genet Branch, NIH, Bethesda, MD 20892 USA
[4]
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
[J].
Elbashir, SM
;
Harborth, J
;
Lendeckel, W
;
Yalcin, A
;
Weber, K
;
Tuschl, T
.
NATURE,
2001, 411 (6836)
:494-498

Elbashir, SM
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Biophys Chem, Dept Cellular Biochem, D-37033 Gottingen, Germany

Harborth, J
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Biophys Chem, Dept Cellular Biochem, D-37033 Gottingen, Germany

Lendeckel, W
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Biophys Chem, Dept Cellular Biochem, D-37033 Gottingen, Germany

Yalcin, A
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Biophys Chem, Dept Cellular Biochem, D-37033 Gottingen, Germany

Weber, K
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Biophys Chem, Dept Cellular Biochem, D-37033 Gottingen, Germany

Tuschl, T
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Biophys Chem, Dept Cellular Biochem, D-37033 Gottingen, Germany
[5]
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
[J].
Fire, A
;
Xu, SQ
;
Montgomery, MK
;
Kostas, SA
;
Driver, SE
;
Mello, CC
.
NATURE,
1998, 391 (6669)
:806-811

Fire, A
论文数: 0 引用数: 0
h-index: 0
机构: Carnegie Inst Washington, Dept Embryol, Baltimore, MD 21210 USA

Xu, SQ
论文数: 0 引用数: 0
h-index: 0
机构: Carnegie Inst Washington, Dept Embryol, Baltimore, MD 21210 USA

Montgomery, MK
论文数: 0 引用数: 0
h-index: 0
机构: Carnegie Inst Washington, Dept Embryol, Baltimore, MD 21210 USA

Kostas, SA
论文数: 0 引用数: 0
h-index: 0
机构: Carnegie Inst Washington, Dept Embryol, Baltimore, MD 21210 USA

Driver, SE
论文数: 0 引用数: 0
h-index: 0
机构: Carnegie Inst Washington, Dept Embryol, Baltimore, MD 21210 USA

Mello, CC
论文数: 0 引用数: 0
h-index: 0
机构: Carnegie Inst Washington, Dept Embryol, Baltimore, MD 21210 USA
[6]
Functional genomic analysis of C-elegans chromosome I by systematic RNA interference
[J].
Fraser, AG
;
Kamath, RS
;
Zipperlen, P
;
Martinez-Campos, M
;
Sohrmann, M
;
Ahringer, J
.
NATURE,
2000, 408 (6810)
:325-330

Fraser, AG
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome CRC Inst, Cambridge CB2 1QR, England

Kamath, RS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome CRC Inst, Cambridge CB2 1QR, England

Zipperlen, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome CRC Inst, Cambridge CB2 1QR, England

Martinez-Campos, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome CRC Inst, Cambridge CB2 1QR, England

Sohrmann, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome CRC Inst, Cambridge CB2 1QR, England

Ahringer, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Wellcome CRC Inst, Cambridge CB2 1QR, England
[7]
Functional genomic analysis of cell division in C-elegans using RNAi of genes on chromosome III
[J].
Gönczy, P
;
Echeverri, C
;
Oegema, K
;
Coulson, A
;
Jones, SJM
;
Copley, RR
;
Duperon, J
;
Oegema, J
;
Brehm, M
;
Cassin, E
;
Hannak, E
;
Kirkham, M
;
Pichler, S
;
Flohrs, K
;
Goessen, A
;
Leidel, S
;
Alleaume, AM
;
Martin, C
;
Özlü, N
;
Bork, P
;
Hyman, AA
.
NATURE,
2000, 408 (6810)
:331-336

Gönczy, P
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Echeverri, C
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Oegema, K
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Coulson, A
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Jones, SJM
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Copley, RR
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Duperon, J
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Oegema, J
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Brehm, M
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Cassin, E
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Hannak, E
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Kirkham, M
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Pichler, S
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Flohrs, K
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Goessen, A
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Leidel, S
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Alleaume, AM
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Martin, C
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Özlü, N
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Bork, P
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Hyman, AA
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany
[8]
Short hairpin type of dsRNAs that are controlled by tRNAVal promoter significantly induce RNAi-mediated gene silencing in the cytoplasm of human cells
[J].
Kawasaki, H
;
Taira, K
.
NUCLEIC ACIDS RESEARCH,
2003, 31 (02)
:700-707

Kawasaki, H
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Dept Chem & Biotechnol, Sch Engn, Bunkyo Ku, Tokyo 1138656, Japan

Taira, K
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Tokyo, Dept Chem & Biotechnol, Sch Engn, Bunkyo Ku, Tokyo 1138656, Japan Univ Tokyo, Dept Chem & Biotechnol, Sch Engn, Bunkyo Ku, Tokyo 1138656, Japan
[9]
RETRACTED: Identification of genes that function in the TNF-α-mediated apoptotic pathway using randomized hybrid ribozyme libraries (Retracted Article. See vol 24, pg 1170, 2006)
[J].
Kawasaki, H
;
Onuki, R
;
Suyama, E
;
Taira, K
.
NATURE BIOTECHNOLOGY,
2002, 20 (04)
:376-380

Kawasaki, H
论文数: 0 引用数: 0
h-index: 0
机构: AIST, Natl Inst Adv Ind Sci & Technol, Gene Discovery Res Ctr, Tsukuba, Ibaraki 3058562, Japan

Onuki, R
论文数: 0 引用数: 0
h-index: 0
机构: AIST, Natl Inst Adv Ind Sci & Technol, Gene Discovery Res Ctr, Tsukuba, Ibaraki 3058562, Japan

Suyama, E
论文数: 0 引用数: 0
h-index: 0
机构: AIST, Natl Inst Adv Ind Sci & Technol, Gene Discovery Res Ctr, Tsukuba, Ibaraki 3058562, Japan

Taira, K
论文数: 0 引用数: 0
h-index: 0
机构: AIST, Natl Inst Adv Ind Sci & Technol, Gene Discovery Res Ctr, Tsukuba, Ibaraki 3058562, Japan
[10]
RETRACTED: Identification of genes by hybrid ribozymes that couple cleavage activity with the unwinding activity of an endogenous RNA helicase (Retracted Article. See vol 7, pg 746, 2006)
[J].
Kawasaki, H
;
Taira, K
.
EMBO REPORTS,
2002, 3 (05)
:443-450

Kawasaki, H
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Sch Engn, Dept Chem & Biotechnol, Tokyo 1138656, Japan

Taira, K
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Tokyo, Sch Engn, Dept Chem & Biotechnol, Tokyo 1138656, Japan Univ Tokyo, Sch Engn, Dept Chem & Biotechnol, Tokyo 1138656, Japan