Arrangements in the modular evolution of proteins

被引:163
作者
Moore, Andrew D. [2 ]
Bjorklund, Asa K. [1 ]
Ekrnan, Diana [1 ]
Bornberg-Bauer, Erich [2 ]
Elofsson, Arne [1 ]
机构
[1] Stockholm Univ, Stockholm Bioinformat Ctr, Ctr Biomembrane Res, SE-10691 Stockholm, Sweden
[2] Univ Munster, IEB, D-48149 Munster, Germany
关键词
D O I
10.1016/j.tibs.2008.05.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
It has been known for the last couple of decades that proteins evolve partly through rearrangements of larger fragments, typically domains. These units are considered the basic modules of protein structure, evolution and function. In the last few years, the analysis of protein-domain rearrangements has provided us with functional and evolutionary insights and has aided improved functional predictions and domain assignments to previously uncharacterised genes and proteins. Although some mechanisms that govern modular rearrangements of protein domains have been uncovered, such as the addition or deletion of a single N- or C-terminal domain, much is still unknown about the genetics behind these arrangements.
引用
收藏
页码:444 / 451
页数:8
相关论文
共 76 条
[1]   SCOP database in 2004: refinements integrate structure and sequence family data [J].
Andreeva, A ;
Howorth, D ;
Brenner, SE ;
Hubbard, TJP ;
Chothia, C ;
Murzin, AG .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D226-D229
[2]   Domain combinations in archaeal, eubacterial and eukaryotic proteomes [J].
Apic, G ;
Gough, J ;
Teichmann, SA .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 310 (02) :311-325
[3]  
Apic Gordana, 2003, Journal of Structural and Functional Genomics, V4, P67, DOI 10.1023/A:1026113408773
[4]   Comparative genomics and structural biology of the molecular innovations of eukaryotes [J].
Aravind, L. ;
Iyer, Lakshminarayan M. ;
Koonin, Eugene V. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2006, 16 (03) :409-419
[5]   Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN) [J].
Beaussart, Francois ;
Weiner, January, III ;
Bornberg-Bauer, Erich .
BIOINFORMATICS, 2007, 23 (14) :1834-1836
[6]   Transposable elements, gene creation and genome rearrangement in flowering plants [J].
Bennetzen, JL .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2005, 15 (06) :621-627
[7]   Domain rearrangements in protein evolution [J].
Björklund, ÅK ;
Ekman, D ;
Light, S ;
Frey-Skött, J ;
Elofsson, A .
JOURNAL OF MOLECULAR BIOLOGY, 2005, 353 (04) :911-923
[8]   Expansion of protein domain repeats [J].
Bjorklund, Asa K. ;
Ekman, Diana ;
Elofsson, Arne .
PLOS COMPUTATIONAL BIOLOGY, 2006, 2 (08) :959-970
[9]   The evolution of domain arrangements in proteins and interaction networks [J].
Bornberg-Bauer, E ;
Beaussart, F ;
Kummerfeld, S ;
Teichmann, S ;
Weiner, J .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2005, 62 (04) :435-445
[10]   Randomness, structural uniqueness, modularity and neutral evolution in sequence space of model proteins [J].
Bornberg-Bauer, E .
ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS, 2002, 216 :139-154