Arrangements in the modular evolution of proteins

被引:163
作者
Moore, Andrew D. [2 ]
Bjorklund, Asa K. [1 ]
Ekrnan, Diana [1 ]
Bornberg-Bauer, Erich [2 ]
Elofsson, Arne [1 ]
机构
[1] Stockholm Univ, Stockholm Bioinformat Ctr, Ctr Biomembrane Res, SE-10691 Stockholm, Sweden
[2] Univ Munster, IEB, D-48149 Munster, Germany
关键词
D O I
10.1016/j.tibs.2008.05.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
It has been known for the last couple of decades that proteins evolve partly through rearrangements of larger fragments, typically domains. These units are considered the basic modules of protein structure, evolution and function. In the last few years, the analysis of protein-domain rearrangements has provided us with functional and evolutionary insights and has aided improved functional predictions and domain assignments to previously uncharacterised genes and proteins. Although some mechanisms that govern modular rearrangements of protein domains have been uncovered, such as the addition or deletion of a single N- or C-terminal domain, much is still unknown about the genetics behind these arrangements.
引用
收藏
页码:444 / 451
页数:8
相关论文
共 76 条
[41]   Comparative genomics and protein domain graph analyses link ubliquitination and RNA metabolism [J].
Lucas, JI ;
Arnau, V ;
Marín, I .
JOURNAL OF MOLECULAR BIOLOGY, 2006, 357 (01) :9-17
[42]   Exploiting protein structure data to explore the evolution of protein function and biological complexity [J].
Marsden, RL ;
Ranea, JAG ;
Sillero, A ;
Redfern, O ;
Yeats, C ;
Maibaum, M ;
Lee, D ;
Addou, S ;
Reeves, GA ;
Dallman, TJ ;
Orengo, CA .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2006, 361 (1467) :425-440
[43]   REPEATED FOLDING PATTERN IN COPPER-ZINC SUPEROXIDE-DISMUTASE [J].
MCLACHLAN, AD .
NATURE, 1980, 285 (5762) :267-268
[44]   InterDom: a database of putative interacting protein domains for validating predicted protein interaction and complexes [J].
Ng, SK ;
Zhang, Z ;
Tan, SH ;
Lin, K .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :251-254
[45]   Protein families and their evolution - A structural perspective [J].
Orengo, CA ;
Thornton, JM .
ANNUAL REVIEW OF BIOCHEMISTRY, 2005, 74 :867-900
[46]   Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins [J].
Pandey, N ;
Ganapathi, M ;
Dasgupta, D ;
Das Sutar, SK ;
Dash, D .
BIOINFORMATICS, 2004, 20 (17) :2904-2910
[47]   Identification of genomic features using microsyntenies of domains: Domain teams [J].
Pasek, S ;
Bergeron, A ;
Risler, JL ;
Louis, A ;
Ollivier, E ;
Raffinot, M .
GENOME RESEARCH, 2005, 15 (06) :867-874
[48]   Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins [J].
Pasek, Sophie ;
Risler, Jean-Loup ;
Brezellec, Pierre .
BIOINFORMATICS, 2006, 22 (12) :1418-1423
[49]   Modular assembly of genes and the evolution of new functions [J].
Patthy, L .
GENETICA, 2003, 118 (2-3) :217-231
[50]   EVOLUTION OF THE PROTEASES OF BLOOD-COAGULATION AND FIBRINOLYSIS BY ASSEMBLY FROM MODULES [J].
PATTHY, L .
CELL, 1985, 41 (03) :657-663