Posttranscriptional Regulation of miRNAs Harboring Conserved Terminal Loops

被引:273
作者
Michlewski, Gracjan [1 ]
Guil, Sonia [1 ,2 ]
Semple, Colin A. [1 ]
Caceres, Javier F. [1 ]
机构
[1] Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland
[2] Catalan Inst Oncol ICO IDIBELL, Canc Epigenet & Biol Program PEBC, Barcelona 08907, Catalonia, Spain
基金
英国医学研究理事会; 英国惠康基金;
关键词
D O I
10.1016/j.molcel.2008.10.013
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We recently found that hnRNP A1, a protein implicated in many aspects of RNA processing, acts as an auxiliary factor for the Drosha-mediated processing of a microRNA precursor, pri-miR-18a. Here, we provide the mechanism by which hnRNP A1 regulates this event. We show that hnRNP A1 binds to the loop of pri-miR-18a and induces a relaxation at the stem, creating a more favorable cleavage site for Drosha. We found that approximately 14% of all pri-miRNAs have highly conserved loops, which we predict act as landing pads for trans-acting factors influencing miRNA processing. In agreement, we show that 2'O-methyl oligonucleotides targeting conserved loops (LooptomiRs) abolish miRNA processing in vitro. Furthermore, we present evidence to support an essential role of conserved loops for pri-miRNA processing. Altogether, these data suggest the existence of auxiliary factors for the processing of specific miRNAs, revealing an additional level of complexity for the regulation of miRNA biogenesis.
引用
收藏
页码:383 / 393
页数:11
相关论文
共 39 条
[1]   The functions of animal microRNAs [J].
Ambros, V .
NATURE, 2004, 431 (7006) :350-355
[2]   Phylogenetic shadowing and computational identification of human microRNA genes [J].
Berezikov, E ;
Guryev, V ;
van de Belt, J ;
Wienholds, E ;
Plasterk, RHA ;
Cuppen, E .
CELL, 2005, 120 (01) :21-24
[3]   Role for a bidentate ribonuclease in the initiation step of RNA interference [J].
Bernstein, E ;
Caudy, AA ;
Hammond, SM ;
Hannon, GJ .
NATURE, 2001, 409 (6818) :363-366
[4]   RNA-BINDING SPECIFICITY OF HNRNP A1 - SIGNIFICANCE OF HNRNP A1 HIGH-AFFINITY BINDING-SITES IN PRE-MESSENGER-RNA SPLICING [J].
BURD, CG ;
DREYFUSS, G .
EMBO JOURNAL, 1994, 13 (05) :1197-1204
[5]   MicroRNA functions [J].
Bushati, Natascha ;
Cohen, Stephen M. .
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, 2007, 23 :175-205
[6]   Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity [J].
Caceres, JF ;
Misteli, T ;
Screaton, GR ;
Spector, DL ;
Krainer, AR .
JOURNAL OF CELL BIOLOGY, 1997, 138 (02) :225-238
[7]   A rapid and efficient protocol to purify biologically active recombinant proteins from mammalian cells [J].
Cazalla, D ;
Sanford, JR ;
Cáceres, JF .
PROTEIN EXPRESSION AND PURIFICATION, 2005, 42 (01) :54-58
[8]   microRNAs in vertebrate physiology and human disease [J].
Chang, Tsung-Cheng ;
Mendell, Joshua T. .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2007, 8 :215-239
[9]   SMAD proteins control DROSHA-mediated microRNA maturation [J].
Davis, Brandi N. ;
Hilyard, Aaron C. ;
Lagna, Giorgio ;
Hata, Akiko .
NATURE, 2008, 454 (7200) :56-U2
[10]   RETRACTED: DEAD-box RNA helicase subunits of the Drosha complex are required for processing of rRNA and a subset of microRNAs (Retracted article. See vol. 16, pg. 1126, 2014) [J].
Fukuda, Toru ;
Yamagata, Kaoru ;
Fujiyama, Sally ;
Matsumoto, Takahiro ;
Koshida, Iori ;
Yoshimura, Kimihiro ;
Mihara, Masatomo ;
Naitou, Masanori ;
Endoh, Hideki ;
Nakamura, Takashi ;
Akimoto, Chihiro ;
Yamamoto, Yoko ;
Katagiri, Takenobu ;
Foulds, Charles ;
Takezawa, Shinichiro ;
Kitagawa, Hirochika ;
Takeyama, Ken-ichi ;
O'Malley, Bert W. ;
Kato, Shigeaki .
NATURE CELL BIOLOGY, 2007, 9 (05) :604-U221