共 39 条
Posttranscriptional Regulation of miRNAs Harboring Conserved Terminal Loops
被引:273
作者:

Michlewski, Gracjan
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机构:
Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland

Guil, Sonia
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机构:
Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland
Catalan Inst Oncol ICO IDIBELL, Canc Epigenet & Biol Program PEBC, Barcelona 08907, Catalonia, Spain Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland

Semple, Colin A.
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Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland

Caceres, Javier F.
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Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland
机构:
[1] Western Gen Hosp, Inst Genet & Mol Med, Med Res Council Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland
[2] Catalan Inst Oncol ICO IDIBELL, Canc Epigenet & Biol Program PEBC, Barcelona 08907, Catalonia, Spain
基金:
英国医学研究理事会;
英国惠康基金;
关键词:
D O I:
10.1016/j.molcel.2008.10.013
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
We recently found that hnRNP A1, a protein implicated in many aspects of RNA processing, acts as an auxiliary factor for the Drosha-mediated processing of a microRNA precursor, pri-miR-18a. Here, we provide the mechanism by which hnRNP A1 regulates this event. We show that hnRNP A1 binds to the loop of pri-miR-18a and induces a relaxation at the stem, creating a more favorable cleavage site for Drosha. We found that approximately 14% of all pri-miRNAs have highly conserved loops, which we predict act as landing pads for trans-acting factors influencing miRNA processing. In agreement, we show that 2'O-methyl oligonucleotides targeting conserved loops (LooptomiRs) abolish miRNA processing in vitro. Furthermore, we present evidence to support an essential role of conserved loops for pri-miRNA processing. Altogether, these data suggest the existence of auxiliary factors for the processing of specific miRNAs, revealing an additional level of complexity for the regulation of miRNA biogenesis.
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页码:383 / 393
页数:11
相关论文
共 39 条
[1]
The functions of animal microRNAs
[J].
Ambros, V
.
NATURE,
2004, 431 (7006)
:350-355

Ambros, V
论文数: 0 引用数: 0
h-index: 0
机构:
Dartmouth Coll Sch Med, Dept Genet, Hanover, NH 03755 USA Dartmouth Coll Sch Med, Dept Genet, Hanover, NH 03755 USA
[2]
Phylogenetic shadowing and computational identification of human microRNA genes
[J].
Berezikov, E
;
Guryev, V
;
van de Belt, J
;
Wienholds, E
;
Plasterk, RHA
;
Cuppen, E
.
CELL,
2005, 120 (01)
:21-24

Berezikov, E
论文数: 0 引用数: 0
h-index: 0
机构:
Hubrecht Lab, NL-3584 CT Utrecht, Netherlands Hubrecht Lab, NL-3584 CT Utrecht, Netherlands

Guryev, V
论文数: 0 引用数: 0
h-index: 0
机构:
Hubrecht Lab, NL-3584 CT Utrecht, Netherlands Hubrecht Lab, NL-3584 CT Utrecht, Netherlands

van de Belt, J
论文数: 0 引用数: 0
h-index: 0
机构:
Hubrecht Lab, NL-3584 CT Utrecht, Netherlands Hubrecht Lab, NL-3584 CT Utrecht, Netherlands

Wienholds, E
论文数: 0 引用数: 0
h-index: 0
机构:
Hubrecht Lab, NL-3584 CT Utrecht, Netherlands Hubrecht Lab, NL-3584 CT Utrecht, Netherlands

Plasterk, RHA
论文数: 0 引用数: 0
h-index: 0
机构:
Hubrecht Lab, NL-3584 CT Utrecht, Netherlands Hubrecht Lab, NL-3584 CT Utrecht, Netherlands

Cuppen, E
论文数: 0 引用数: 0
h-index: 0
机构:
Hubrecht Lab, NL-3584 CT Utrecht, Netherlands Hubrecht Lab, NL-3584 CT Utrecht, Netherlands
[3]
Role for a bidentate ribonuclease in the initiation step of RNA interference
[J].
Bernstein, E
;
Caudy, AA
;
Hammond, SM
;
Hannon, GJ
.
NATURE,
2001, 409 (6818)
:363-366

Bernstein, E
论文数: 0 引用数: 0
h-index: 0
机构: Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

Caudy, AA
论文数: 0 引用数: 0
h-index: 0
机构: Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

Hammond, SM
论文数: 0 引用数: 0
h-index: 0
机构: Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

Hannon, GJ
论文数: 0 引用数: 0
h-index: 0
机构: Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
[4]
RNA-BINDING SPECIFICITY OF HNRNP A1 - SIGNIFICANCE OF HNRNP A1 HIGH-AFFINITY BINDING-SITES IN PRE-MESSENGER-RNA SPLICING
[J].
BURD, CG
;
DREYFUSS, G
.
EMBO JOURNAL,
1994, 13 (05)
:1197-1204

BURD, CG
论文数: 0 引用数: 0
h-index: 0
机构: UNIV PENN,SCH MED,HOWARD HUGHES MED INST,PHILADELPHIA,PA 19104

DREYFUSS, G
论文数: 0 引用数: 0
h-index: 0
机构: UNIV PENN,SCH MED,HOWARD HUGHES MED INST,PHILADELPHIA,PA 19104
[5]
MicroRNA functions
[J].
Bushati, Natascha
;
Cohen, Stephen M.
.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY,
2007, 23
:175-205

Bushati, Natascha
论文数: 0 引用数: 0
h-index: 0
机构:
European Mol Biol Lab, Dev Biol Unit, D-69117 Heidelberg, Germany European Mol Biol Lab, Dev Biol Unit, D-69117 Heidelberg, Germany

Cohen, Stephen M.
论文数: 0 引用数: 0
h-index: 0
机构:
European Mol Biol Lab, Dev Biol Unit, D-69117 Heidelberg, Germany European Mol Biol Lab, Dev Biol Unit, D-69117 Heidelberg, Germany
[6]
Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity
[J].
Caceres, JF
;
Misteli, T
;
Screaton, GR
;
Spector, DL
;
Krainer, AR
.
JOURNAL OF CELL BIOLOGY,
1997, 138 (02)
:225-238

Caceres, JF
论文数: 0 引用数: 0
h-index: 0
机构: COLD SPRING HARBOR LAB,COLD SPRING HARBOR,NY 11724

Misteli, T
论文数: 0 引用数: 0
h-index: 0
机构: COLD SPRING HARBOR LAB,COLD SPRING HARBOR,NY 11724

Screaton, GR
论文数: 0 引用数: 0
h-index: 0
机构: COLD SPRING HARBOR LAB,COLD SPRING HARBOR,NY 11724

Spector, DL
论文数: 0 引用数: 0
h-index: 0
机构: COLD SPRING HARBOR LAB,COLD SPRING HARBOR,NY 11724

Krainer, AR
论文数: 0 引用数: 0
h-index: 0
机构: COLD SPRING HARBOR LAB,COLD SPRING HARBOR,NY 11724
[7]
A rapid and efficient protocol to purify biologically active recombinant proteins from mammalian cells
[J].
Cazalla, D
;
Sanford, JR
;
Cáceres, JF
.
PROTEIN EXPRESSION AND PURIFICATION,
2005, 42 (01)
:54-58

Cazalla, D
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland MRC, Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland

Sanford, JR
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland MRC, Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland

Cáceres, JF
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland MRC, Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland
[8]
microRNAs in vertebrate physiology and human disease
[J].
Chang, Tsung-Cheng
;
Mendell, Joshua T.
.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS,
2007, 8
:215-239

Chang, Tsung-Cheng
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Sch Med, McKusick Nathans Inst Genet Med, Baltimore, MD 21205 USA Johns Hopkins Univ, Sch Med, McKusick Nathans Inst Genet Med, Baltimore, MD 21205 USA

Mendell, Joshua T.
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Sch Med, McKusick Nathans Inst Genet Med, Baltimore, MD 21205 USA Johns Hopkins Univ, Sch Med, McKusick Nathans Inst Genet Med, Baltimore, MD 21205 USA
[9]
SMAD proteins control DROSHA-mediated microRNA maturation
[J].
Davis, Brandi N.
;
Hilyard, Aaron C.
;
Lagna, Giorgio
;
Hata, Akiko
.
NATURE,
2008, 454 (7200)
:56-U2

Davis, Brandi N.
论文数: 0 引用数: 0
h-index: 0
机构:
Tufts Univ, Sch Med, Dept Biochem, Boston, MA 02111 USA
Tufts Med Ctr, Mol Cardiol Res Inst, Boston, MA 02111 USA Tufts Univ, Sch Med, Dept Biochem, Boston, MA 02111 USA

Hilyard, Aaron C.
论文数: 0 引用数: 0
h-index: 0
机构:
Tufts Med Ctr, Mol Cardiol Res Inst, Boston, MA 02111 USA Tufts Univ, Sch Med, Dept Biochem, Boston, MA 02111 USA

Lagna, Giorgio
论文数: 0 引用数: 0
h-index: 0
机构:
Tufts Med Ctr, Mol Cardiol Res Inst, Boston, MA 02111 USA Tufts Univ, Sch Med, Dept Biochem, Boston, MA 02111 USA

Hata, Akiko
论文数: 0 引用数: 0
h-index: 0
机构:
Tufts Univ, Sch Med, Dept Biochem, Boston, MA 02111 USA
Tufts Med Ctr, Mol Cardiol Res Inst, Boston, MA 02111 USA Tufts Univ, Sch Med, Dept Biochem, Boston, MA 02111 USA
[10]
RETRACTED: DEAD-box RNA helicase subunits of the Drosha complex are required for processing of rRNA and a subset of microRNAs (Retracted article. See vol. 16, pg. 1126, 2014)
[J].
Fukuda, Toru
;
Yamagata, Kaoru
;
Fujiyama, Sally
;
Matsumoto, Takahiro
;
Koshida, Iori
;
Yoshimura, Kimihiro
;
Mihara, Masatomo
;
Naitou, Masanori
;
Endoh, Hideki
;
Nakamura, Takashi
;
Akimoto, Chihiro
;
Yamamoto, Yoko
;
Katagiri, Takenobu
;
Foulds, Charles
;
Takezawa, Shinichiro
;
Kitagawa, Hirochika
;
Takeyama, Ken-ichi
;
O'Malley, Bert W.
;
Kato, Shigeaki
.
NATURE CELL BIOLOGY,
2007, 9 (05)
:604-U221

Fukuda, Toru
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Yamagata, Kaoru
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Fujiyama, Sally
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Matsumoto, Takahiro
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Koshida, Iori
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Yoshimura, Kimihiro
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Mihara, Masatomo
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Naitou, Masanori
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Endoh, Hideki
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Nakamura, Takashi
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Akimoto, Chihiro
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Yamamoto, Yoko
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Katagiri, Takenobu
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Foulds, Charles
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Takezawa, Shinichiro
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Kitagawa, Hirochika
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Takeyama, Ken-ichi
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

O'Malley, Bert W.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan

Kato, Shigeaki
论文数: 0 引用数: 0
h-index: 0
机构: Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1130032, Japan