Towards multiscale plant models: integrating cellular networks

被引：31

作者：

Baldazzi, Valentina ^{[1
]}

Bertin, Nadia ^{[1
]}

de Jong, Hidde ^{[2
]}

Genard, Michel ^{[1
]}

机构：

[1] INRA, UR Plantes & Syst Culture Hort 1115, Domaine St Paul, F-84941 Avignon 9, France

[2] INRIA Grenoble Rhone Alpes, F-38334 Montbonnot St Martin, Saint Ismier, France

来源：

TRENDS IN PLANT SCIENCE | 2012年 / 17卷 / 12期

关键词：

SCALE METABOLIC MODEL; REGULATORY NETWORK; SYSTEMS BIOLOGY; TRANSCRIPTIONAL REGULATION; ARABIDOPSIS; CROP; DYNAMICS; ROBUST; GENETICS; DECOMPOSITION;

D O I：

10.1016/j.tplants.2012.06.012

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

One of the ambitions of 'crop systems biology' is to combine information from molecular biology with a broader view of plant development and growth. In the context of modeling, this calls for a multiscale perspective that focuses on the interplay between cellular and macroscopic studies. With this in mind, in this review we aim to draw attention to a panel of approaches that were developed in the context of systems biology and are used for analyzing and describing the behavior of cellular networks. Ultimately, insights obtained from these methods can be exploited to refine the description of plant processes, leading to integrated plant-cellular models.

引用

页码：728 / 736

页数：9

共 102 条

[91] The auxin signalling network translates dynamic input into robust patterning at the shoot apex [J].

Vernoux, Teva ;

Brunoud, Geraldine ;

Farcot, Etienne ;

Morin, Valerie ;

Van den Daele, Hilde ;

Legrand, Jonathan ;

Oliva, Marina ;

Das, Pradeep ;

Larrieu, Antoine ;

Wells, Darren ;

Guedon, Yann ;

Armitage, Lynne ;

Picard, Franck ;

Guyomarc'h, Soazig ;

Cellier, Coralie ;

Parry, Geraint ;

Koumproglou, Rachil ;

Doonan, John H. ;

Estelle, Mark ;

Godin, Christophe ;

Kepinski, Stefan ;

Bennett, Malcolm ;

De Veylder, Lieven ;

Traas, Jan .

MOLECULAR SYSTEMS BIOLOGY, 2011, 7

[92]

Villers F, 2008, STAT APPL GENET MOL, V7

[93] The segment polarity network is a robust developmental module [J].

von Dassow, G ;

Meir, E ;

Munro, EM ;

Odell, GM .

NATURE, 2000, 406 (6792) :188-192

[94] Functional-structural plant modelling: a new versatile tool in crop science [J].

Vos, J. ;

Evers, J. B. ;

Buck-Sorlin, G. H. ;

Andrieu, B. ;

Chelle, M. ;

de Visser, P. H. B. .

JOURNAL OF EXPERIMENTAL BOTANY, 2010, 61 (08) :2101-2115

[95] Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling [J].

Wabnik, Krzysztof ;

Kleine-Vehn, Juergen ;

Balla, Jozef ;

Sauer, Michael ;

Naramoto, Satoshi ;

Reinoehl, Vilem ;

Merks, Roeland M. H. ;

Govaerts, Willy ;

Friml, Jiri .

MOLECULAR SYSTEMS BIOLOGY, 2010, 6

[96] The road to modularity [J].

Wagner, Gunter P. ;

Pavlicev, Mihaela ;

Cheverud, James M. .

NATURE REVIEWS GENETICS, 2007, 8 (12) :921-931

[97] Gene module level analysis: identification to networks and dynamics [J].

Wang, Xuewei ;

Dalkic, Ertugrul ;

Wu, Ming ;

Chan, Christina .

CURRENT OPINION IN BIOTECHNOLOGY, 2008, 19 (05) :482-491

[98] A Genome-Scale Metabolic Model Accurately Predicts Fluxes in Central Carbon Metabolism under Stress Conditions [J].

Williams, Thomas C. R. ;

Poolman, Mark G. ;

Howden, Andrew J. M. ;

Schwarzlander, Markus ;

Fell, David A. ;

Ratcliffe, R. George ;

Sweetlove, Lee J. .

PLANT PHYSIOLOGY, 2010, 154 (01) :311-323

[99] Modelling the crop: from system dynamics to systems biology [J].

Yin, Xinyou ;

Struik, Paul C. .

JOURNAL OF EXPERIMENTAL BOTANY, 2010, 61 (08) :2171-2183

[100] Role of crop physiology in predicting gene-to-phenotype relationships [J].

Yin, XY ;

Struik, PC ;

Kropff, MJ .

TRENDS IN PLANT SCIENCE, 2004, 9 (09) :426-432

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