Long non-coding RNAs: new players in cell differentiation and development

被引:2519
作者
Fatica, Alessandro [1 ]
Bozzoni, Irene [1 ,2 ,3 ,4 ]
机构
[1] Sapienza Univ Rome, Dept Biol & Biotechnol Charles Darwin, I-00185 Rome, Italy
[2] CNR, Inst Mol Biol & Pathol, I-00185 Rome, Italy
[3] Ist Pasteur Fdn Cenci Bolognetti, I-00185 Rome, Italy
[4] Sapienza Univ Rome, Ist Italiano Tecnol, Ctr Life Nano Sci Sapienza, I-00161 Rome, Italy
关键词
X-CHROMOSOME; ANTISENSE TRANSCRIPTION; MUSCLE DIFFERENTIATION; GENE-EXPRESSION; SERIAL ANALYSIS; XIST RNA; IN-VIVO; CHROMATIN; PLURIPOTENCY; INACTIVATION;
D O I
10.1038/nrg3606
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Genomes of multicellular organisms are characterized by the pervasive expression of different types of non-coding RNAs (ncRNAs). Long ncRNAs (lncRNAs) belong to a novel heterogeneous class of ncRNAs that includes thousands of different species. lncRNAs have crucial roles in gene expression control during both developmental and differentiation processes, and the number of lncRNA species increases in genomes of developmentally complex organisms, which highlights the importance of RNA-based levels of control in the evolution of multicellular organisms. In this Review, we describe the function of lncRNAs in developmental processes, such as in dosage compensation, genomic imprinting, cell differentiation and organogenesis, with a particular emphasis on mammalian development.
引用
收藏
页码:7 / 21
页数:15
相关论文
共 129 条
[1]   Complex architecture and regulated expression of the Sox2ot locus during vertebrate development [J].
Amaral, Paulo P. ;
Neyt, Christine ;
Wilkins, Simon J. ;
Askarian-Amiri, Marjan E. ;
Sunkin, Susan M. ;
Perkins, Andrew C. ;
Mattick, John S. .
RNA, 2009, 15 (11) :2013-2027
[2]   Epigenetic control of Hox genes during neurogenesis, development, and disease [J].
Barber, Benjamin A. ;
Rastegar, Mojgan .
ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER, 2010, 192 (05) :261-274
[3]   Long Noncoding RNAs: Cellular Address Codes in Development and Disease [J].
Batista, Pedro J. ;
Chang, Howard Y. .
CELL, 2013, 152 (06) :1298-1307
[4]   A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression [J].
Bernard, Delphine ;
Prasanth, Kannanganattu V. ;
Tripathi, Vidisha ;
Colasse, Sabrina ;
Nakamura, Tetsuya ;
Xuan, Zhenyu ;
Zhang, Michael Q. ;
Sedel, Frederic ;
Jourdren, Laurent ;
Coulpier, Fanny ;
Triller, Antoine ;
Spector, David L. ;
Bessis, Alain .
EMBO JOURNAL, 2010, 29 (18) :3082-3093
[5]   RETRACTED: The Noncoding RNA Mistral Activates Hoxa6 and Hoxa7 Expression and Stem Cell Differentiation by Recruiting MLL1 to Chromatin (Retracted Article) [J].
Bertani, Stephane ;
Sauer, Silvia ;
Bolotin, Eugene ;
Sauer, Frank .
MOLECULAR CELL, 2011, 43 (06) :1040-1046
[6]   Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry [J].
Bond, Allison M. ;
VanGompel, Michael J. W. ;
Sametsky, Evgeny A. ;
Clark, Mary F. ;
Savage, Julie C. ;
Disterhoft, John F. ;
Kohtz, Jhumku D. .
NATURE NEUROSCIENCE, 2009, 12 (08) :1020-U91
[7]   Core transcriptional regulatory circuitry in human embryonic stem cells [J].
Boyer, LA ;
Lee, TI ;
Cole, MF ;
Johnstone, SE ;
Levine, SS ;
Zucker, JR ;
Guenther, MG ;
Kumar, RM ;
Murray, HL ;
Jenner, RG ;
Gifford, DK ;
Melton, DA ;
Jaenisch, R ;
Young, RA .
CELL, 2005, 122 (06) :947-956
[8]   Distinct and dynamic myogenic populations in the vertebrate embryo [J].
Buckingham, Margaret ;
Vincent, Stephane D. .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2009, 19 (05) :444-453
[9]   A Long ncRNA Links Copy Number Variation to a Polycomb/Trithorax Epigenetic Switch in FSHD Muscular Dystrophy [J].
Cabianca, Daphne S. ;
Casa, Valentina ;
Bodega, Beatrice ;
Xynos, Alexandros ;
Ginelli, Enrico ;
Tanaka, Yujiro ;
Gabellini, Davide .
CELL, 2012, 149 (04) :819-831
[10]   Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses [J].
Cabili, Moran N. ;
Trapnell, Cole ;
Goff, Loyal ;
Koziol, Magdalena ;
Tazon-Vega, Barbara ;
Regev, Aviv ;
Rinn, John L. .
GENES & DEVELOPMENT, 2011, 25 (18) :1915-1927