Metadynamic metainference: Convergence towards force field independent structural ensembles of a disordered peptide

被引:30
作者
Loehr, Thomas
Jussupow, Alexander
Camilloni, Carlo [1 ]
机构
[1] Tech Univ Munich, Dept Chem, Lichtenbergstr 4, D-85747 Garching, Germany
关键词
RESIDUAL DIPOLAR COUPLINGS; REPLICA-AVERAGED METADYNAMICS; PROTEIN-FOLDING SIMULATIONS; FREE-ENERGY LANDSCAPES; CONFORMATIONAL ENSEMBLES; MOLECULAR-DYNAMICS; COMPLEX; OPTIMIZATION; FLUCTUATIONS; INFORMATION;
D O I
10.1063/1.4981211
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070305 [高分子化学与物理];
摘要
Metadynamic metainference has been recently introduced as a theoretical framework to determine structural ensembles by combining and weighting their noise multiple sources of experimental data with molecular mechanics force fields and metadynamics simulations. Here we build upon these initial developments to further extend and streamline the computational approach. We also show that metadynamic metainference can actually determine a structural ensemble for a disordered peptide that is essentially independent from the employed force field. We further show that it is possible to use a very computationally efficient implicit solvent force field in the place of very expensive state-of-the-art explicit solvent ones without a significant loss in accuracy. Published by AIP Publishing.
引用
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页数:10
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