FlyBase: genomes by the dozen

被引:168
作者
Crosby, Madeline A.
Goodman, Joshua L.
Strelets, Victor B.
Zhang, Peili
Gelbart, William M.
机构
[1] Harvard Univ, Biol Labs, Cambridge, MA 02138 USA
[2] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA
基金
英国医学研究理事会;
关键词
D O I
10.1093/nar/gkl827
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
FlyBase (http://flybase.org/) is the primary database of genetic and genomic data for the insect family Drosophilidae. Historically, Drosophila melanogaster has been the most extensively studied species in this family, but recent determination of the genomic sequences of an additional 11 Drosophila species opens up new avenues of research for other Drosophila species. This extensive sequence resource, encompassing species with well-defined phylogenetic relationships, provides a model system for comparative genomic analyses. FlyBase has developed tools to facilitate access to and navigation through this invaluable new data collection.
引用
收藏
页码:D486 / D491
页数:6
相关论文
共 11 条
  • [1] [Anonymous], 2002, GENOME BIOL
  • [2] Begun DJ, 2003, PROPOSAL SEQUENCING
  • [3] CLARK A, 2003, PROPOSAL DROSOPHILA
  • [4] COOLEY L, 2001, DROSOPHILA WHITE PAP
  • [5] The Sequence Ontology: a tool for the unification of genome annotations
    Eilbeck, K
    Lewis, SE
    Mungall, CJ
    Yandell, M
    Stein, L
    Durbin, R
    Ashburner, M
    [J]. GENOME BIOLOGY, 2005, 6 (05)
  • [6] FlyBase: anatomical data, images and queries
    Grumbling, Gary
    Strelets, Victor
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D484 - D488
  • [7] The Gene Ontology (GO) database and informatics resource
    Harris, MA
    Clark, J
    Ireland, A
    Lomax, J
    Ashburner, M
    Foulger, R
    Eilbeck, K
    Lewis, S
    Marshall, B
    Mungall, C
    Richter, J
    Rubin, GM
    Blake, JA
    Bult, C
    Dolan, M
    Drabkin, H
    Eppig, JT
    Hill, DP
    Ni, L
    Ringwald, M
    Balakrishnan, R
    Cherry, JM
    Christie, KR
    Costanzo, MC
    Dwight, SS
    Engel, S
    Fisk, DG
    Hirschman, JE
    Hong, EL
    Nash, RS
    Sethuraman, A
    Theesfeld, CL
    Botstein, D
    Dolinski, K
    Feierbach, B
    Berardini, T
    Mundodi, S
    Rhee, SY
    Apweiler, R
    Barrell, D
    Camon, E
    Dimmer, E
    Lee, V
    Chisholm, R
    Gaudet, P
    Kibbe, W
    Kishore, R
    Schwarz, EM
    Sternberg, P
    Gwinn, M
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D258 - D261
  • [8] HOSKINS RA, 2002, GENOME BIOL, V0003
  • [9] Comparative genome sequencing of Drosophila pseudoobscura:: Chromosomal, gene, and cis-element evolution
    Richards, S
    Liu, Y
    Bettencourt, BR
    Hradecky, P
    Letovsky, S
    Nielsen, R
    Thornton, K
    Hubisz, MJ
    Chen, R
    Meisel, RP
    Couronne, O
    Hua, SJ
    Smith, MA
    Zhang, PL
    Liu, J
    Bussemaker, HJ
    van Batenburg, MF
    Howells, SL
    Scherer, SE
    Sodergren, E
    Matthews, BB
    Crosby, MA
    Schroeder, AJ
    Ortiz-Barrientos, D
    Rives, CM
    Metzker, ML
    Muzny, DM
    Scott, G
    Steffen, D
    Wheeler, DA
    Worley, KC
    Havlak, P
    Durbin, KJ
    Egan, A
    Gill, R
    Hume, J
    Morgan, MB
    Miner, G
    Hamilton, C
    Huang, YM
    Waldron, L
    Verduzco, D
    Clerc-Blankenburg, KP
    Dubchak, I
    Noor, MAF
    Anderson, W
    White, KP
    Clark, AG
    Schaeffer, SW
    Gelbart, W
    [J]. GENOME RESEARCH, 2005, 15 (01) : 1 - 18
  • [10] The Generic Genome Browser: A building block for a model organism system database
    Stein, LD
    Mungall, C
    Shu, SQ
    Caudy, M
    Mangone, M
    Day, A
    Nickerson, E
    Stajich, JE
    Harris, TW
    Arva, A
    Lewis, S
    [J]. GENOME RESEARCH, 2002, 12 (10) : 1599 - 1610