Biophysical techniques for ligand screening and drug design

被引:46
作者
Renaud, Jean-Paul [1 ,2 ]
Delsuc, Marc-Andre [1 ,3 ]
机构
[1] IGBMC, INSERM, U964, CNRS,UDS,Dept Biol & Genom Struct,UMR7104, F-67404 Illkirch Graffenstaden, France
[2] NovAliX, F-67400 Illkirch Graffenstaden, France
[3] NMRTEC, F-67400 Illkirch Graffenstaden, France
关键词
ISOTHERMAL TITRATION CALORIMETRY; MASS-SPECTROMETRY; PROTEIN CRYSTALLOGRAPHY; DATA-COLLECTION; NMR-SPECTROSCOPY; HIGH-RESOLUTION; DISCOVERY; BINDING; COMPLEXES; STABILITY;
D O I
10.1016/j.coph.2009.06.008
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Biophysical methods are currently involved in drug design in two ways: the qualitative detection of small molecule binding to a target (hit identification), and the quantitative determination of physical parameters associated to binding (hit-to-lead progression). In the first case, efforts have been made toward miniaturization, automation, and speed-up of the screening process allowing a higher throughput. In the second one, sophisticated applications have been developed to derive detailed relevant information. Preferably, several methods are used in combination to avoid bias and/or limitations associated with a single one, often together with computational methods. New developments should allow important systems overlooked so far to be studied: membrane proteins, intrinsically unstructured proteins, as well as in-cell studies.
引用
收藏
页码:622 / 628
页数:7
相关论文
共 60 条
[1]   Determining kinetics and affinities of protein interactions using a parallel real-time label-free biosensor, the Octet [J].
Abdiche, Yasmina ;
Malashock, Dan ;
Pinkerton, Alanna ;
Pons, Jaurne .
ANALYTICAL BIOCHEMISTRY, 2008, 377 (02) :209-217
[2]   Affinity selection-mass spectrometry screening techniques for small molecule drug discovery [J].
Annis, D. Allen ;
Nickbarg, Elliot ;
Yang, Xianshu ;
Ziebell, Michael R. ;
Whitehurst, Charles E. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2007, 11 (05) :518-526
[3]   Identification of selective inhibitors of uncharacterized enzymes by high-throughput screening with fluorescent activity-based probes [J].
Bachovchin, Daniel A. ;
Brown, Steven J. ;
Rosen, Hugh ;
Cravatt, Benjamin F. .
NATURE BIOTECHNOLOGY, 2009, 27 (04) :387-394
[4]   Automated nano-electrospray mass spectrometry for protein-ligand screening by noncovalent interaction applied to human H-FABP and A-FABP [J].
Benkestock, K ;
Van Pelt, CK ;
Åkerud, T ;
Sterling, A ;
Edlund, PO ;
Roeraade, J .
JOURNAL OF BIOMOLECULAR SCREENING, 2003, 8 (03) :247-256
[5]   High-throughput sample handling and data collection at synchrotrons: embedding the ESRF into the high-throughput gene-to-structure pipeline [J].
Beteva, A. ;
Cipriani, F. ;
Cusack, S. ;
Delageniere, S. ;
Gabadinho, J. ;
Gordon, E. J. ;
Guijarro, M. ;
Hall, D. R. ;
Larsen, S. ;
Launer, L. ;
Lavault, C. B. ;
Leonard, G. A. ;
Mairs, T. ;
McCarthy, A. ;
McCarthy, J. ;
Meyer, J. ;
Mitchell, E. ;
Monaco, S. ;
Nurizzo, D. ;
Pernot, P. ;
Pieritz, R. ;
Ravelli, R. G. B. ;
Rey, V. ;
Shepard, W. ;
Spruce, D. ;
Stuart, D. I. ;
Svensson, O. ;
Theveneau, P. ;
Thibault, X. ;
Turkenburg, J. ;
Walsh, M. ;
McSweeney, S. M. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2006, 62 :1162-1169
[6]   Proteins and proteomics: life on the surface [J].
Blow, Nathan .
NATURE METHODS, 2009, 6 (05) :389-392
[7]   High-throughput X-ray crystallography for drug discovery [J].
Blundell, TL ;
Patel, S .
CURRENT OPINION IN PHARMACOLOGY, 2004, 4 (05) :490-496
[8]   Monitoring ligand modulation of protein-protein interactions by mass spectrometry:: Estrogen receptor α-SRC1 [J].
Bovet, Cedroc ;
Ruff, Marc ;
Eiler, Sylvia ;
Granger, Florence ;
Wenzel, Ryan ;
Nazabal, Alexis ;
Moras, Dino ;
Zenobi, Renato .
ANALYTICAL CHEMISTRY, 2008, 80 (20) :7833-7839
[9]   Calorimetry and thermodynamics in drug design [J].
Chaires, Jonathan B. .
ANNUAL REVIEW OF BIOPHYSICS, 2008, 37 :135-151
[10]   Advances in membrane receptor screening and analysis [J].
Cooper, MA .
JOURNAL OF MOLECULAR RECOGNITION, 2004, 17 (04) :286-315