Emerging of stochastic dynamical equalities and steady state thermodynamics from Darwinian dynamics

被引:108
作者
Ao, P. [1 ,2 ]
机构
[1] Univ Washington, Dept Mech Engn, Seattle, WA 98195 USA
[2] Univ Washington, Dept Phys, Seattle, WA 98195 USA
关键词
non-equilibrium processes; Darwinian dynamics; generalized Einstein relation; absence of detailed balance; stochastic dynamical equalities;
D O I
10.1088/0253-6102/49/5/01
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
The evolutionary dynamics first conceived by Darwin and Wallace, referring to as Darwinian dynamics in the present paper, has been found to be universally valid in biology. The statistical mechanics and thermodynamics, while enormous successful in physics, have been in an awkward situation of wanting a consistent dynamical understanding. Here we present from a formal point of view an exploration of the connection between thermodynamics and Darwinian dynamics and a few related topics. We first show that the stochasticity in Darwinian dynamics implies the existence temperature, hence the canonical distribution of Boltzmann-Gibbs type. In term of relative entropy the Second Law of thermodynamics is dynamically demonstrated without detailed balance condition, and is valid regardless of size of the system. In particular, the dynamical component responsible for breaking detailed balance condition does not contribute to the change of the relative entropy. Two types of stochastic dynamical equalities of current interest are explicitly discussed in the present approach: One is based on Feynman-Kac formula and another is a generalization of Einstein relation. Both are directly accessible to experimental tests. Our demonstration indicates that Darwinian dynamics represents logically a simple and straightforward starting point for statistical mechanics and thermodynamics and is complementary to and consistent with conservative dynamics that dominates the physical sciences. Present exploration suggests the existence of a unified stochastic dynamical framework both near and far from equilibrium.
引用
收藏
页码:1073 / 1090
页数:18
相关论文
共 147 条
[71]  
HILL T. L., 2005, FREE ENERGY TRANSDUC
[72]  
Hofbauer J., 1998, Evol. Games Popul. Dyn., DOI DOI 10.1017/CBO9781139173179
[73]   NEURONS WITH GRADED RESPONSE HAVE COLLECTIVE COMPUTATIONAL PROPERTIES LIKE THOSE OF 2-STATE NEURONS [J].
HOPFIELD, JJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1984, 81 (10) :3088-3092
[74]   Free energy surfaces from single-molecule force spectroscopy [J].
Hummer, G ;
Szabo, A .
ACCOUNTS OF CHEMICAL RESEARCH, 2005, 38 (07) :504-513
[75]   Free energy reconstruction from nonequilibrium single-molecule pulling experiments [J].
Hummer, G ;
Szabo, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (07) :3658-3661
[76]  
Karevski D, 2006, CONDENS MATTER PHYS, V9, P219, DOI 10.5488/CMP.9.2.219
[77]  
Kauffman S.A., 1993, ORIGINS ORDER
[78]  
Kimura M., 1983, Neutral theory of molecular evolution
[79]   NONLINEAR BROWNIAN-MOTION [J].
KLIMONTOVICH, YL .
USPEKHI FIZICHESKIKH NAUK, 1994, 164 (08) :811-844
[80]   Stochasticity in gene expression:: From theories to phenotypes [J].
Kærn, M ;
Elston, TC ;
Blake, WJ ;
Collins, JJ .
NATURE REVIEWS GENETICS, 2005, 6 (06) :451-464