An extended dynamical hydration shell around proteins

被引:561
作者
Ebbinghaus, Simon [1 ]
Kim, Seung Joong
Heyden, Matthias [1 ]
Yu, Xin [3 ]
Heugen, Udo [1 ]
Gruebele, Martin [2 ]
Leitner, David M. [3 ]
Havenith, Martina [1 ]
机构
[1] Ruhr Univ Bochum, Lehrstuhl Phys Chem 2, D-44780 Bochum, Germany
[2] Univ Illinois, Ctr Biophys & Computat Biol, Dept Chem, Urbana, IL 61801 USA
[3] Univ Nevada, Dept Chem, Reno, NV 89557 USA
关键词
solvation dynamics; THz spectroscopy; lambda repressor; molecular modeling;
D O I
10.1073/pnas.0709207104
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The focus in protein folding has been very much on the protein backbone and sidechains. However, hydration waters make comparable contributions to the structure and energy of proteins. The coupling between fast hydration dynamics and protein dynamics is considered to play an important role in protein folding. Fundamental questions of protein hydration include, how far out into the solvent does the influence of the biomolecule reach, how is the water affected, and how are the properties of the hydration water influenced by the separation between protein molecules in solution? We show here that Terahertz spectroscopy directly probes such solvation dynamics around proteins, and determines the width of the dynamical hydration layer. We also investigate the dependence of solvation dynamics on protein concentration. We observe an unexpected nonmonotonic trend in the measured terahertz absorbance of the five helix bundle protein lambda*(6-85) as a function of the protein: water molar ratio. The trend can be explained by overlapping solvation layers around the proteins. Molecular dynamics simulations indicate water dynamics in the solvation layer around one protein to be distinct from bulk water out to approximate to 10 angstrom. At higher protein concentrations such that solvation layers overlap, the calculated absorption spectrum varies non-monotonically, qualitatively consistent with the experimental observations. The experimental data suggest an influence on the correlated water network motion beyond 20 angstrom, greater than the pure structural correlation length usually observed.
引用
收藏
页码:20749 / 20752
页数:4
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