Solvent-tuning the collapse and helix formation time scales of λ*6-85

被引:29
作者
Dumont, Charles
Matsumura, Yoshitaka
Kim, Seung Joong
Li, Jinsong
Kondrashkina, Elena
Kihara, Hiroshi
Gruebele, Martin
机构
[1] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
[2] Kansai Med Univ, Dept Phys, Hirakata, Osaka 5731136, Japan
[3] IIT, BioCAT Adv Photon Source, BCPS Dept, Chicago, IL 60439 USA
[4] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[5] Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
关键词
collapse; heterogeneous kinetics; cryosolvent; stopped flow;
D O I
10.1110/ps.062257406
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The lambda(6-85)* pseudo-wild type of lambda repressor fragment is a fast two-state folder (k(f) approximate to 35 mu sec(-1) at 58 degrees C). Previously, highly stable lambda(6-85)* mutants with k(f) > 30 mu sec(-1) have been engineered to fold nearly or fully downhill. Stabilization of the native state by solvent tuning might also tune lambda(6-85)* away from two-state folding. We test this prediction by examining the folding thermodynamics and kinetics of lambda(6-85)* in a stabilizing solvent, 45% by weight aqueous ethylene glycol at -28 degrees C. Detection of kinetics by circular dichroism at 222 nm (sensitive to helix content) and small angle X-ray scattering (measuring the radius of gyration) shows that refolding from guanidine hydrochloride denatured conditions exhibits very different time scales for collapse and secondary structure formation: the two processes become decoupled. Collapse remains a low-barrier activated process, while the fastest of several secondary structure formation time scales approaches the downhill folding limit. Two-state folding of lambda(6-85)* is not a robust process.
引用
收藏
页码:2596 / 2604
页数:9
相关论文
共 56 条
[1]   Kinetic refolding of β-lactoglobulin.: Studies by synchrotron X-ray scattering, and circular dichroism, absorption and fluorescence spectroscopy [J].
Arai, M ;
Ikura, T ;
Semisotnov, GV ;
Kihara, H ;
Amemiya, Y ;
Kuwajima, K .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 275 (01) :149-162
[2]   Fast and faster:: A designed variant of the B-domain of protein A folds in 3 μsec [J].
Arora, P ;
Oas, TG ;
Myers, JK .
PROTEIN SCIENCE, 2004, 13 (04) :847-853
[3]  
BALDWIN RL, 1995, J BIOMOL NMR, V5, P103
[4]   Viscosity dependence of the folding kinetics of a dimeric and monomeric coiled coil [J].
Bhattacharyya, RP ;
Sosnick, TR .
BIOCHEMISTRY, 1999, 38 (08) :2601-2609
[5]  
Bolz R.E., 1973, CRC HDB TABLES APPL
[6]   Backbone dynamics and structural characterization of the partially folded A state of ubiquitin by H-1, C-13, and N-15 nuclear magnetic resonance spectroscopy [J].
Brutscher, B ;
Bruschweiler, R ;
Ernst, RR .
BIOCHEMISTRY, 1997, 36 (42) :13043-13053
[7]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[8]   Early events in the folding of four-helix-bundle heme proteins [J].
Faraone-Mennella, J ;
Gray, HB ;
Winkler, JR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (18) :6315-6319
[9]   One-state downhill versus conventional protein folding [J].
Ferguson, N ;
Schartau, PJ ;
Sharpe, TD ;
Sato, S ;
Fersht, AR .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 344 (02) :295-301
[10]   The BioCAT undulator beamline 18ID: a facility for biological non-crystalline diffraction and X-ray absorption spectroscopy at the Advanced Photon Source [J].
Fischetti, R ;
Stepanov, S ;
Rosenbaum, G ;
Barrea, R ;
Black, E ;
Gore, D ;
Heurich, R ;
Kondrashkina, E ;
Kropf, AJ ;
Wang, S ;
Zhang, K ;
Irving, TC ;
Bunker, GB .
JOURNAL OF SYNCHROTRON RADIATION, 2004, 11 :399-405