Organism-Level Analysis of Vaccination Reveals Networks of Protection across Tissues

被引:69
作者
Kadoki, Motohiko [1 ]
Patil, Ashwini [3 ]
Thaiss, Cornelius C. [1 ]
Brooks, Donald J. [1 ]
Pandey, Surya [1 ,5 ]
Deep, Deeksha [1 ]
Alvarez, David [4 ]
von Andrian, Ulrich H. [4 ]
Wagers, Amy J. [2 ]
Nakai, Kenta [3 ]
Mikkelsen, Tarjei S. [2 ]
Soumillon, Magali [2 ]
Chevrier, Nicolas [1 ,5 ]
机构
[1] Harvard Univ, Ctr Syst Biol, Fac Arts & Sci, Cambridge, MA 02138 USA
[2] Harvard Univ, Harvard Stem Cell Inst, Dept Stem Cell & Regenerat Biol, Cambridge, MA 02138 USA
[3] Univ Tokyo, Inst Med Sci, Human Genome Ctr, Tokyo 1088639, Japan
[4] Harvard Med Sch, Dept Microbiol & Immunobiol, Boston, MA 02115 USA
[5] Univ Chicago, Inst Mol Engn, Chicago, IL 60637 USA
基金
日本学术振兴会;
关键词
CD8(+) T-CELLS; RESIDENT MEMORY; GENE-EXPRESSION; PROGRAM; VIRUS; DIFFERENTIATION; INFECTION; MIGRATION; GENOME; READS;
D O I
10.1016/j.cell.2017.08.024
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
A fundamental challenge in immunology is to decipher the principles governing immune responses at the whole-organism scale. Here, using a comparative infection model, we observe immune signal propagation within and between organs to obtain a dynamic map of immune processes at the organism level. We uncover two inter-organ mechanisms of protective immunity mediated by soluble and cellular factors. First, analyzing ligand-receptor connectivity across tissues reveals that type I IFNs trigger a whole-body antiviral state, protecting the host within hours after skin vaccination. Second, combining parabiosis, single-cell analyses, and gene knockouts, we uncover a multi-organ web of tissue-resident memory T cells that functionally adapt to their environment to stop viral spread across the organism. These results have implications for manipulating tissue-resident memory T cells through vaccination and open up new lines of inquiry for the analysis of immune responses at the organism level.
引用
收藏
页码:398 / +
页数:37
相关论文
共 75 条
[1]
Cutting Edge: Intravascular Staining Redefines Lung CD8 T Cell Responses [J].
Anderson, Kristin G. ;
Sung, Heungsup ;
Skon, Cara N. ;
Lefrancois, Leo ;
Deisinger, Angela ;
Vezys, Vaiva ;
Masopust, David .
JOURNAL OF IMMUNOLOGY, 2012, 189 (06) :2702-2706
[2]
Skin-resident memory CD8+ T cells trigger a state of tissue-wide pathogen alert [J].
Ariotti, Silvia ;
Hogenbirk, Marc A. ;
Dijkgraaf, Feline E. ;
Visser, Lindy L. ;
Hoekstra, Mirjam E. ;
Song, Ji-Ying ;
Jacobs, Heinz ;
Haanen, John B. ;
Schumacher, Ton N. .
SCIENCE, 2014, 346 (6205) :101-105
[3]
Bailey S., 2012, ARXIV12084122
[4]
Aging-induced type I interferon response at the choroid plexus negatively affects brain function [J].
Baruch, Kuti ;
Deczkowska, Aleksandra ;
David, Eyal ;
Castellano, Joseph M. ;
Miller, Omer ;
Kertser, Alexander ;
Berkutzki, Tamara ;
Barnett-Itzhaki, Zohar ;
Bezalel, Dana ;
Wyss-Coray, Tony ;
Amit, Ido ;
Schwartz, Michal .
SCIENCE, 2014, 346 (6205) :89-93
[5]
A Systems Analysis Identifies a Feedforward Inflammatory Circuit Leading to Lethal Influenza Infection [J].
Brandes, Marlene ;
Klauschen, Frederick ;
Kuchen, Stefan ;
Germain, Ronald N. .
CELL, 2013, 154 (01) :197-212
[6]
Structural and molecular interrogation of intact biological systems [J].
Chung, Kwanghun ;
Wallace, Jenelle ;
Kim, Sung-Yon ;
Kalyanasundaram, Sandhiya ;
Andalman, Aaron S. ;
Davidson, Thomas J. ;
Mirzabekov, Julie J. ;
Zalocusky, Kelly A. ;
Mattis, Joanna ;
Denisin, Aleksandra K. ;
Pak, Sally ;
Bernstein, Hannah ;
Ramakrishnan, Charu ;
Grosenick, Logan ;
Gradinaru, Viviana ;
Deisseroth, Karl .
NATURE, 2013, 497 (7449) :332-+
[7]
STAR: ultrafast universal RNA-seq aligner [J].
Dobin, Alexander ;
Davis, Carrie A. ;
Schlesinger, Felix ;
Drenkow, Jorg ;
Zaleski, Chris ;
Jha, Sonali ;
Batut, Philippe ;
Chaisson, Mark ;
Gingeras, Thomas R. .
BIOINFORMATICS, 2013, 29 (01) :15-21
[8]
Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease [J].
Dobrin, Radu ;
Zhu, Jun ;
Molony, Cliona ;
Argman, Carmen ;
Parrish, Mark L. ;
Carlson, Sonia ;
Allan, Mark F. ;
Pomp, Daniel ;
Schadt, Eric E. .
GENOME BIOLOGY, 2009, 10 (05)
[9]
Interorgan Communication Pathways in Physiology: Focus on Drosophila [J].
Droujinine, Ilia A. ;
Perrimon, Norbert .
ANNUAL REVIEW OF GENETICS, VOL 50, 2016, 50 :539-570
[10]
Earl P L, 2001, Curr Protoc Mol Biol, VChapter 16, DOI [10.1002/0471142727.mb1616s43, 10.1002/0471142727.mb1617s43]