共 45 条
Stable isotope probing - linking microbial identity to function
被引:392
作者:

Dumont, MG
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England

Murrell, JC
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England
机构:
[1] Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England
基金:
英国自然环境研究理事会;
关键词:
D O I:
10.1038/nrmicro1162
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
Stable isotope probing (SIP) is a technique that is used to identify the microorganisms in environmental samples that use a particular growth substrate. The method relies on the incorporation of a substrate that is highly enriched in a stable isotope, such as C-13, and the identification of active microorganisms by the selective recovery and analysis of isotope-enriched cellular components. DNA and rRNA are the most informative taxonomic biomarkers and C-13-labelled molecules can be purified from unlabelled nucleic acid by density-gradient centrifugation. The future holds great promise for SIP, particularly when combined with other emerging technologies such as microarrays and metagenomics.
引用
收藏
页码:499 / 504
页数:6
相关论文
共 45 条
[1]
The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function
[J].
Adamczyk, J
;
Hesselsoe, M
;
Iversen, N
;
Horn, M
;
Lehner, A
;
Nielsen, PH
;
Schloter, M
;
Roslev, P
;
Wagner, M
.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY,
2003, 69 (11)
:6875-6887

Adamczyk, J
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Hesselsoe, M
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Iversen, N
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Horn, M
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Lehner, A
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Nielsen, PH
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Schloter, M
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Roslev, P
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

论文数: 引用数:
h-index:
机构:
[2]
Development and validation of a diagnostic microbial microarray for methanotrophs
[J].
Bodrossy, L
;
Stralis-Pavese, N
;
Murrell, JC
;
Radajewski, S
;
Weilharter, A
;
Sessitsch, A
.
ENVIRONMENTAL MICROBIOLOGY,
2003, 5 (07)
:566-582

Bodrossy, L
论文数: 0 引用数: 0
h-index: 0
机构:
ARC Seibersdorf Res GmbH, Dept Biotechnol, Div Life & Environm Sci, A-2444 Seibersdorf, Austria ARC Seibersdorf Res GmbH, Dept Biotechnol, Div Life & Environm Sci, A-2444 Seibersdorf, Austria

Stralis-Pavese, N
论文数: 0 引用数: 0
h-index: 0
机构: ARC Seibersdorf Res GmbH, Dept Biotechnol, Div Life & Environm Sci, A-2444 Seibersdorf, Austria

Murrell, JC
论文数: 0 引用数: 0
h-index: 0
机构: ARC Seibersdorf Res GmbH, Dept Biotechnol, Div Life & Environm Sci, A-2444 Seibersdorf, Austria

Radajewski, S
论文数: 0 引用数: 0
h-index: 0
机构: ARC Seibersdorf Res GmbH, Dept Biotechnol, Div Life & Environm Sci, A-2444 Seibersdorf, Austria

Weilharter, A
论文数: 0 引用数: 0
h-index: 0
机构: ARC Seibersdorf Res GmbH, Dept Biotechnol, Div Life & Environm Sci, A-2444 Seibersdorf, Austria

Sessitsch, A
论文数: 0 引用数: 0
h-index: 0
机构: ARC Seibersdorf Res GmbH, Dept Biotechnol, Div Life & Environm Sci, A-2444 Seibersdorf, Austria
[3]
A marine microbial consortium apparently mediating anaerobic oxidation of methane
[J].
Boetius, A
;
Ravenschlag, K
;
Schubert, CJ
;
Rickert, D
;
Widdel, F
;
Gieseke, A
;
Amann, R
;
Jorgensen, BB
;
Witte, U
;
Pfannkuche, O
.
NATURE,
2000, 407 (6804)
:623-626

Boetius, A
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Ravenschlag, K
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Schubert, CJ
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Rickert, D
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Widdel, F
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Gieseke, A
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Amann, R
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Jorgensen, BB
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Witte, U
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

Pfannkuche, O
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany
[4]
Direct linking of microbial populations to specific biogeochemical processes by 13C-labelling of biomarkers
[J].
Boschker, HTS
;
Nold, SC
;
Wellsbury, P
;
Bos, D
;
de Graaf, W
;
Pel, R
;
Parkes, RJ
;
Cappenberg, TE
.
NATURE,
1998, 392 (6678)
:801-805

Boschker, HTS
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Inst Ecol, Ctr Estuarine & Coastal Ecol, NL-4400 AC Yerseke, Netherlands

Nold, SC
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Inst Ecol, Ctr Estuarine & Coastal Ecol, NL-4400 AC Yerseke, Netherlands

Wellsbury, P
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Inst Ecol, Ctr Estuarine & Coastal Ecol, NL-4400 AC Yerseke, Netherlands

Bos, D
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Inst Ecol, Ctr Estuarine & Coastal Ecol, NL-4400 AC Yerseke, Netherlands

de Graaf, W
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Inst Ecol, Ctr Estuarine & Coastal Ecol, NL-4400 AC Yerseke, Netherlands

Pel, R
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Inst Ecol, Ctr Estuarine & Coastal Ecol, NL-4400 AC Yerseke, Netherlands

Parkes, RJ
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Inst Ecol, Ctr Estuarine & Coastal Ecol, NL-4400 AC Yerseke, Netherlands

Cappenberg, TE
论文数: 0 引用数: 0
h-index: 0
机构: Netherlands Inst Ecol, Ctr Estuarine & Coastal Ecol, NL-4400 AC Yerseke, Netherlands
[5]
Detection and classification of atmospheric methane oxidizing bacteria in soil
[J].
Bull, ID
;
Parekh, NR
;
Hall, GH
;
Ineson, P
;
Evershed, RP
.
NATURE,
2000, 405 (6783)
:175-178

Bull, ID
论文数: 0 引用数: 0
h-index: 0
机构: Univ Bristol, Sch Chem, Bristol BS8 1TS, Avon, England

Parekh, NR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Bristol, Sch Chem, Bristol BS8 1TS, Avon, England

Hall, GH
论文数: 0 引用数: 0
h-index: 0
机构: Univ Bristol, Sch Chem, Bristol BS8 1TS, Avon, England

Ineson, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ Bristol, Sch Chem, Bristol BS8 1TS, Avon, England

Evershed, RP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Bristol, Sch Chem, Bristol BS8 1TS, Avon, England
[6]
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
[J].
Cole, JR
;
Chai, B
;
Farris, RJ
;
Wang, Q
;
Kulam, SA
;
McGarrell, DM
;
Garrity, GM
;
Tiedje, JM
.
NUCLEIC ACIDS RESEARCH,
2005, 33
:D294-D296

Cole, JR
论文数: 0 引用数: 0
h-index: 0
机构:
Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Chai, B
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Farris, RJ
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Wang, Q
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Kulam, SA
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

McGarrell, DM
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Garrity, GM
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Tiedje, JM
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA
[7]
In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants
[J].
Daims, H
;
Nielsen, JL
;
Nielsen, PH
;
Schleifer, KH
;
Wagner, M
.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY,
2001, 67 (11)
:5273-5284

Daims, H
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Nielsen, JL
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Nielsen, PH
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

Schleifer, KH
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Lehrstuhl Mikrobiol, D-85350 Freising Weihenstephan, Germany

论文数: 引用数:
h-index:
机构:
[8]
Isolation of acidophilic methane-oxidizing bacteria from northern peat wetlands
[J].
Dedysh, SN
;
Panikov, NS
;
Liesack, W
;
Grosskopf, R
;
Zhou, JZ
;
Tiedje, JM
.
SCIENCE,
1998, 282 (5387)
:281-284

Dedysh, SN
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Panikov, NS
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Liesack, W
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Grosskopf, R
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Zhou, JZ
论文数: 0 引用数: 0
h-index: 0
机构: Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA

Tiedje, JM
论文数: 0 引用数: 0
h-index: 0
机构:
Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA
[9]
Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community
[J].
Ginige, MP
;
Hugenholtz, P
;
Daims, H
;
Wagner, M
;
Keller, J
;
Blackall, LL
.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY,
2004, 70 (01)
:588-596

Ginige, MP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Queensland, Adv Wastewater Management Ctr, St Lucia, Qld 4072, Australia

Hugenholtz, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ Queensland, Adv Wastewater Management Ctr, St Lucia, Qld 4072, Australia

Daims, H
论文数: 0 引用数: 0
h-index: 0
机构: Univ Queensland, Adv Wastewater Management Ctr, St Lucia, Qld 4072, Australia

Wagner, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Queensland, Adv Wastewater Management Ctr, St Lucia, Qld 4072, Australia

Keller, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Queensland, Adv Wastewater Management Ctr, St Lucia, Qld 4072, Australia

Blackall, LL
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Queensland, Adv Wastewater Management Ctr, St Lucia, Qld 4072, Australia Univ Queensland, Adv Wastewater Management Ctr, St Lucia, Qld 4072, Australia
[10]
13CO2 pulse labelling of plants in tandem with stable isotope probing:: methodological considerations for examining microbial function in the rhizosphere
[J].
Griffiths, RI
;
Manefield, M
;
Ostle, N
;
McNamara, N
;
O'Donnell, AG
;
Bailey, MJ
;
Whiteley, AS
.
JOURNAL OF MICROBIOLOGICAL METHODS,
2004, 58 (01)
:119-129

Griffiths, RI
论文数: 0 引用数: 0
h-index: 0
机构: CEH Oxford, Mol Microbial Ecol Sect, Oxford OX1 3SR, England

Manefield, M
论文数: 0 引用数: 0
h-index: 0
机构: CEH Oxford, Mol Microbial Ecol Sect, Oxford OX1 3SR, England

Ostle, N
论文数: 0 引用数: 0
h-index: 0
机构: CEH Oxford, Mol Microbial Ecol Sect, Oxford OX1 3SR, England

McNamara, N
论文数: 0 引用数: 0
h-index: 0
机构: CEH Oxford, Mol Microbial Ecol Sect, Oxford OX1 3SR, England

O'Donnell, AG
论文数: 0 引用数: 0
h-index: 0
机构: CEH Oxford, Mol Microbial Ecol Sect, Oxford OX1 3SR, England

Bailey, MJ
论文数: 0 引用数: 0
h-index: 0
机构: CEH Oxford, Mol Microbial Ecol Sect, Oxford OX1 3SR, England

Whiteley, AS
论文数: 0 引用数: 0
h-index: 0
机构: CEH Oxford, Mol Microbial Ecol Sect, Oxford OX1 3SR, England