From stationary to instationary metabolic flux analysis

被引:76
作者
Wiechert, W [1 ]
Nöh, K [1 ]
机构
[1] Univ Siegen, Inst Syst Engn, Dept Simulat, D-57068 Siegen, Germany
来源
TECHNOLOGY TRANSFER IN BIOTECHNOLOGY: FROM LAB TO INDUSTRY TO PRODUCTION | 2005年 / 92卷
关键词
instationary metabolic flux analysis; carbon labeling experiments; repeated sampling; high throughput flux analysis; network simulation;
D O I
10.1007/b98921
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Metabolic flux analysis using C-13 labeled substrates is an important tool for metabolic engineering. Although it has now been evolving for more than ten years, metabolic flux analysis has still not reached the limits of its application. Current developments aim at extending to instationary industrial production conditions like batch and fed-batch fermentations on the one hand, and at miniaturization and high throughput flux analysis on the other. in both cases, reducing the duration of the labeling experiment is of major interest. For that reason, there is now interest in the instationary transient of the C-13 enrichment during a labeling experiment. This paper presents some recent developments in the field of instationary metabolic flux analysis and discusses some critical aspects and limitations using some simulation examples.
引用
收藏
页码:145 / 172
页数:28
相关论文
共 67 条
[21]   Metabolic isotopomer labeling systems. Part II: structural flux identifiability analysis [J].
Isermann, N ;
Wiechert, W .
MATHEMATICAL BIOSCIENCES, 2003, 183 (02) :175-214
[22]   Changes of in vivo fluxes through central metabolic pathways during the production of nystatin by Streptomyces noursei in batch culture [J].
Jonsbu, E ;
Christensen, B ;
Nielsen, J .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2001, 56 (1-2) :93-100
[23]  
Klapa MI, 2000, BIOREACTION ENG, P106
[24]   Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae [J].
Lange, HC ;
Heijnen, JJ .
BIOTECHNOLOGY AND BIOENGINEERING, 2001, 75 (03) :334-344
[25]   EFFECT OF METABOLIC CONDITIONS ON PROTEIN-TURNOVER IN YEAST [J].
LOPEZ, S ;
GANCEDO, JM .
BIOCHEMICAL JOURNAL, 1979, 178 (03) :769-776
[26]  
Marx A, 1996, BIOTECHNOL BIOENG, V49, P111, DOI 10.1002/(SICI)1097-0290(19960120)49:2<111::AID-BIT1>3.0.CO
[27]  
2-T
[28]  
MASSAOUDI ME, 2003, METAB ENG, V5, P86
[29]   Metabolic flux analysis of the phenylpropanoid pathway in wound-healing potato tuber tissue using stable isotope-labeled tracer and LC-MS spectroscopy [J].
Matsuda, F ;
Morino, K ;
Miyashita, M ;
Miyagawa, H .
PLANT AND CELL PHYSIOLOGY, 2003, 44 (05) :510-517
[30]  
Möllney M, 1999, BIOTECHNOL BIOENG, V66, P86, DOI 10.1002/(SICI)1097-0290(1999)66:2<86::AID-BIT2>3.0.CO