Noncovalent interactions: Defining cooperativity. Ligand binding aided by reduced dynamic behavior of receptors. Binding of bacterial cell wall analogues to ristocetin A

被引:27
作者
Williams, DH [1 ]
Davies, NL [1 ]
Zerella, R [1 ]
Bardsley, B [1 ]
机构
[1] Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England
关键词
D O I
10.1021/ja039409p
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Changes in the relative populations of the monomer and asymmetric dimer forms of ristocetin A, upon binding of two molecules of ligand, suggest that ligand binding is negatively cooperative with respect to dimerization. However, strong hydrogen bonds formed in the binding sites of the ligands are reinforced in the dimer relative to the monomer, and the barrier to dissociation of the dimer is increased upon binding of the ligands. It is concluded that the interactions which are common in the binding of both ligands are made with positive cooperativity with respect to those involved in dimerization. The conclusions are relevant to the binding of ligands to proteins, where ligand binding energy can be derived from stabilization of the protein in its ligand-bound form.
引用
收藏
页码:2042 / 2049
页数:8
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共 32 条
[21]   HYDROGEN-BOND LENGTH AND H-1-NMR CHEMICAL-SHIFTS IN PROTEINS [J].
WAGNER, G ;
PARDI, A ;
WUTHRICH, K .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1983, 105 (18) :5948-5949
[22]   ASPECTS OF MOLECULAR RECOGNITION - SOLVENT EXCLUSION AND DIMERIZATION OF THE ANTIBIOTIC RISTOCETIN WHEN BOUND TO A MODEL BACTERIAL CELL-WALL PRECURSOR [J].
WALTHO, JP ;
WILLIAMS, DH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (07) :2475-2480
[23]   Immucillin-H binding to purine nucleoside phosphorylase reduces dynamic solvent exchange [J].
Wang, F ;
Miles, RW ;
Kicska, G ;
Nieves, E ;
Schramm, VL ;
Angeletti, RH .
PROTEIN SCIENCE, 2000, 9 (09) :1660-1668
[24]   A transition-state analogue reduces protein dynamics in hypoxanthine-guanine phosphoribosyltransferase [J].
Wang, F ;
Shi, WX ;
Nieves, E ;
Angeletti, RH ;
Schramm, VL ;
Grubmeyer, C .
BIOCHEMISTRY, 2001, 40 (27) :8043-8054
[25]   CRYSTALLOGRAPHIC AND THERMODYNAMIC COMPARISON OF NATURAL AND SYNTHETIC LIGANDS BOUND TO STREPTAVIDIN [J].
WEBER, PC ;
WENDOLOSKI, JJ ;
PANTOLIANO, MW ;
SALEMME, FR .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (09) :3197-3200
[26]   Enthalpy/entropy compensation as a competition between dynamics and bonding: The relevance to melting of crystals and biological aggregates [J].
Williams, DH ;
O'Brien, DP ;
Bardsley, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (04) :737-738
[27]   Influence of kinetic barriers on the structures of non-covalently bonded states [J].
Williams, DH ;
Bardsley, B ;
O'Brien, DP .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 2000, (08) :1681-1684
[28]   Changes in motion vs. bonding in positively vs. negatively cooperative interactions [J].
Williams, DH ;
Calderone, CT ;
O'Brien, DP ;
Zerella, R .
CHEMICAL COMMUNICATIONS, 2002, (12) :1266-1267
[29]   Ligand binding energy and catalytic efficiency from improved packing within receptors and enzymes [J].
Williams, DH ;
Stephens, E ;
Zhou, M .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 329 (02) :389-399
[30]   An analysis of the origins of a cooperative binding energy of dimerization [J].
Williams, DH ;
Maguire, AJ ;
Tsuzuki, W ;
Westwell, MS .
SCIENCE, 1998, 280 (5364) :711-714