Strain-specific polymerase chain reaction assays for discrimination of prunus necrotic ringspot virus isolates

被引:5
作者
Hammond, RW [1 ]
Howell, WE [1 ]
Mink, GI [1 ]
Crosslin, JM [1 ]
机构
[1] USDA ARS, Mol Plant Pathol Lab, Beltsville, MD 20705 USA
来源
17TH INTERNATIONAL SYMPOSIUM ON VIRUS AND VIRUS-LIKE DISEASES OF TEMPERATE FRUIT CROPS: FRUIT TREE DISEASES, VOLS 1 AND 2 | 1998年 / 472期
关键词
cherry; PNRSV;
D O I
10.17660/ActaHortic.1998.472.25
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Nucleotide sequence alignment of a 1.65 kb PCR product obtained from RNA3 of several biologically distinct PNRSV sweet cherry isolates revealed correlations between symptom type and the nucleotide and amino acid sequences of the 3a (putative movement protein) and 3b (coat protein) open reading frames (Hammond and Crosslin, 1998). Based upon this analysis, reverse transcription-polymerase chain reaction (RT-PCR) assays have been developed that can distinguish between symptom types. The results of PCR amplification using type-specific primers that amplify a portion of the coat protein gene show that the primer-selection procedure developed for PNRSV constitutes a reliable method of viral strain discrimination in cherry.
引用
收藏
页码:235 / 242
页数:8
相关论文
共 11 条
[1]   BIOPHYSICAL DIFFERENCES AMONG PRUNUS NECROTIC RINGSPOT ILARVIRUSES [J].
CROSSLIN, JM ;
MINK, GI .
PHYTOPATHOLOGY, 1992, 82 (02) :200-206
[2]  
HAMMOND RW, 1998, IN PRESS J GEN VIROL
[3]   NATURAL SPREAD OF CHERRY RUGOSE MOSAIC DISEASE AND 2 PRUNUS NECROTIC RINGSPOT VIRUS BIOTYPES IN A CENTRAL WASHINGTON SWEET CHERRY ORCHARD [J].
HOWELL, WE ;
MINK, GI .
PLANT DISEASE, 1988, 72 (07) :636-640
[4]   Improved RNA extraction from woody plants for the detection of viral pathogens by reverse transcription-polymerase chain reaction [J].
MacKenzie, DJ ;
McLean, MA ;
Mukerji, S ;
Green, M .
PLANT DISEASE, 1997, 81 (02) :222-226
[5]   3 SEROTYPES OF PRUNUS NECROTIC RINGSPOT VIRUS ISOLATED FROM RUGOSE MOSAIC-DISEASED SWEET CHERRY TREES IN WASHINGTON [J].
MINK, GI ;
HOWELL, WE ;
COLE, A ;
REGEV, S .
PLANT DISEASE, 1987, 71 (01) :91-93
[6]  
Mink GI, 1992, PLANT DIS INT IMPORT, V2, P335
[7]   Use of unique RNA sequence-specific oligonucleotide primers for RT-PCR to detect and differentiate soybean mosaic virus strains [J].
Omunyin, ME ;
Hill, JH ;
Miller, WA .
PLANT DISEASE, 1996, 80 (10) :1170-1174
[8]   EVALUATION OF AGAROSE-GEL ELECTROPHORESIS FOR RESOLVING NUCLEOPROTEIN COMPONENTS OF PRUNUS NECROTIC RINGSPOT VIRUS [J].
ONG, CA ;
MINK, GI .
PHYTOPATHOLOGY, 1989, 79 (05) :613-619
[9]   The use of short and long PCR products for improved detection of prunus necrotic ringspot virus in woody plants [J].
Rosner, A ;
Maslenin, L ;
Spiegel, S .
JOURNAL OF VIROLOGICAL METHODS, 1997, 67 (02) :135-141
[10]   DEVELOPMENT OF A DETECTION SYSTEM FOR VIRUSES OF WOODY-PLANTS BASED ON PCR ANALYSIS OF IMMOBILIZED VIRIONS [J].
ROWHANI, A ;
MANINGAS, MA ;
LILE, LS ;
DAUBERT, SD ;
GOLINO, DA .
PHYTOPATHOLOGY, 1995, 85 (03) :347-352