Quantitative modeling of sensitivity in bacterial chemotaxis: The role of coupling among different chemoreceptor species

被引:92
作者
Mello, BA
Tu, YH
机构
[1] IBM Corp, Thomas J Watson Res Ctr, Yorktown Hts, NY 10598 USA
[2] Catholic Univ Brasilia, Dept Phys, BR-72030170 Brasilia, DF, Brazil
关键词
D O I
10.1073/pnas.1330839100
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We propose a general theoretical framework for modeling receptor sensitivity in bacterial chemotaxis, taking into account receptor interactions, including those among different receptor species. We show that our model can quantitatively explain the recent in vivo measurements of receptor sensitivity at different ligand concentrations for both mutant and wild-type strains. For mutant strains, our model can fit the experimental data exactly. For the wild-type cell, our model is capable of achieving high gain while having modest values of Hill coefficient for the response curves. Furthermore, the high sensitivity of the wild-type cell in our model is maintained for a wide range of ambient ligand concentrations, facilitated by near-perfect adaptation and dependence of ligand binding on receptor activity. Our study reveals the importance of coupling among different chemoreceptor species, in particular strong interactions between the aspartate (Tar) and serine (Tsr) receptors, which is crucial in explaining both the mutant and wild-type data. Predictions for the sensitivity of other mutant strains and possible improvements of our model for the wild-type cell are also discussed.
引用
收藏
页码:8223 / 8228
页数:6
相关论文
共 23 条
[11]   The two-component signaling pathway of bacterial chemotaxis: A molecular view of signal transduction by receptors, kinases, and adaptation enzymes [J].
Falke, JJ ;
Bass, RB ;
Butler, SL ;
Chervitz, SA ;
Danielson, MA .
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, 1997, 13 :457-512
[12]   Cooperativity between bacterial chemotaxis receptors [J].
Falke, JJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (10) :6530-6532
[13]   Inter-receptor communication through arrays of bacterial chemoreceptors [J].
Gestwicki, JE ;
Kiessling, LL .
NATURE, 2002, 415 (6867) :81-84
[14]   Determinants of chemotactic signal amplification in Escherichia coli [J].
Kim, C ;
Jackson, M ;
Lux, R ;
Khan, S .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 307 (01) :119-135
[15]   Receptor methylation controls the magnitude of stimulus-response coupling in bacterial chemotaxis [J].
Levit, MN ;
Stock, JB .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (39) :36760-36765
[16]   Covalent modification regulates ligand binding to receptor complexes in the chemosensory system of Escherichia coli [J].
Li, GY ;
Weis, RM .
CELL, 2000, 100 (03) :357-365
[17]   Perfect and near-perfect adaptation in a model of bacterial chemotaxis [J].
Mello, BA ;
Tu, Y .
BIOPHYSICAL JOURNAL, 2003, 84 (05) :2943-2956
[18]   A free-energy-based stochastic simulation of the Tar receptor complex [J].
Morton-Firth, CJ ;
Shimizu, TS ;
Bray, D .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 286 (04) :1059-1074
[19]   TEMPORAL COMPARISONS IN BACTERIAL CHEMOTAXIS [J].
SEGALL, JE ;
BLOCK, SM ;
BERG, HC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (23) :8987-8991
[20]   Cooperative model of bacterial sensing [J].
Shi, Y ;
Duke, T .
PHYSICAL REVIEW E, 1998, 58 (05) :6399-6406