Toward an online repository of Standard Operating Procedures (SOPs) for (Meta) genomic annotation

被引：504

作者：

Angiuoli, Samuel V. ^{[1
,2
]}

Gussman, Aaron ^{[1
]}

Klimke, William ^{[3
]}

Cochrane, Guy ^{[4
]}

Field, Dawn ^{[5
]}

Garrity, George ^{[6
]}

Kodira, Chinnappa D. ^{[7
]}

Kyrpides, Nikos ^{[8
]}

Madupu, Ramana ^{[9
]}

Markowitz, Victor ^{[10
]}

Tatusova, Tatiana ^{[3
]}

Thomson, Nick ^{[11
]}

White, Owen ^{[1
]}

机构：

[1] Univ Maryland, Sch Med, Inst Genome Sci, Baltimore, MD 21201 USA

[2] Univ Maryland, Ctr Bioinformat & Computat Biol, College Pk, MD 20742 USA

[3] NIH, Natl Ctr Biotechnol Informat, Baltimore, MD USA

[4] EMBL European Bioinformat Inst, Cambridge, England

[5] Oxford Ctr Ecol & Hydrol, Mol Evolut & Bioinformat Sect, Oxford, England

[6] Michigan State Univ, Dept Microbiol & Mol Genet, E Lansing, MI 48824 USA

[7] Broad Inst MIT & Harvard, Cambridge, MA USA

[8] Joint Genome Inst, Dept Energy, Walnut Creek, CA USA

[9] J Craig Venter Inst, Rockville, MD USA

[10] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[11] Wellcome Trust Sanger Inst, Pathogen Sequencing Unit, Cambridge, England

来源：

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY | 2008年 / 12卷 / 02期

基金：

英国自然环境研究理事会;

关键词：

D O I：

10.1089/omi.2008.0017

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 [微生物学]; 0836 [生物工程]; 090102 [作物遗传育种]; 100705 [微生物与生化药学];

摘要：

The methodologies used to generate genome and metagenome annotations are diverse and vary between groups and laboratories. Descriptions of the annotation process are helpful in interpreting genome annotation data. Some groups have produced Standard Operating Procedures ( SOPs) that describe the annotation process, but standards are lacking for structure and content of these descriptions. In addition, there is no central repository to store and disseminate procedures and protocols for genome annotation. We highlight the importance of SOPs for genome annotation and endorse an online repository of SOPs.

引用

页码：137 / 141

页数：5

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