The International Nucleotide Sequence Database Collaboration

被引：80

作者：

Karsch-Mizrachi, Ilene ^{[1
]}

Nakamura, Yasukazu ^{[2
,3
]}

Cochrane, Guy ^{[4
]}

机构：

[1] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20892 USA

[2] Res Org Informat & Syst, Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118510, Japan

[3] Res Org Informat & Syst, Natl Inst Genet, DNA Data Bank Japan, Mishima, Shizuoka 4118510, Japan

[4] Wellcome Trust Genome Campus, EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

来源：

NUCLEIC ACIDS RESEARCH | 2012年 / 40卷 / D1期

基金：

美国国家科学基金会; 英国惠康基金; 英国生物技术与生命科学研究理事会; 美国国家卫生研究院;

关键词：

D O I：

10.1093/nar/gkr1006

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The members of the International Nucleotide Sequence Database Collaboration (INSDC; http://www.insdc.org) set out to capture, preserve and present globally comprehensive public domain nucleotide sequence information. The work of the long-standing collaboration includes the provision of data formats, annotation conventions and routine global data exchange. Among the many developments to INSDC resources in 2011 are the newly launched BioProject database and improved handling of assembly information. In this article, we outline INSDC services and update the reader on developments in 2011.

引用

页码：D33 / D37

页数：5

共 5 条

[1] BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata
Barrett, Tanya
Clark, Karen
Gevorgyan, Robert
Gorelenkov, Vyacheslav
Gribov, Eugene
Karsch-Mizrachi, Ilene
Kimelman, Michael
Pruitt, Kim D.
Resenchuk, Sergei
Tatusova, Tatiana
Yaschenko, Eugene
Ostell, James
[J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) : D57 - D63
[2] NCBI GEO: archive for functional genomics data sets-10 years on
Barrett, Tanya
Troup, Dennis B.
Wilhite, Stephen E.
Ledoux, Pierre
Evangelista, Carlos
Kim, Irene F.
Tomashevsky, Maxim
Marshall, Kimberly A.
Phillippy, Katherine H.
Sherman, Patti M.
Muertter, Rolf N.
Holko, Michelle
Ayanbule, Oluwabukunmi
Yefanov, Andrey
Soboleva, Alexandra
[J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D1005 - D1010
[3] The International Nucleotide Sequence Database Collaboration
Cochrane, Guy
Karsch-Mizrachi, Ilene
Nakamura, Yasukazu
[J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D15 - D18
[4] The sequence read archive: explosive growth of sequencing data
Kodama, Yuichi
Shumway, Martin
Leinonen, Rasko
[J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) : D54 - D56
[5] ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments
Parkinson, Helen
Sarkans, Ugis
Kolesnikov, Nikolay
Abeygunawardena, Niran
Burdett, Tony
Dylag, Miroslaw
Emam, Ibrahim
Farne, Anna
Hastings, Emma
Holloway, Ele
Kurbatova, Natalja
Lukk, Margus
Malone, James
Mani, Roby
Pilicheva, Ekaterina
Rustici, Gabriella
Sharma, Anjan
Williams, Eleanor
Adamusiak, Tomasz
Brandizi, Marco
Sklyar, Nataliya
Brazma, Alvis
[J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D1002 - D1004

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