NASCArrays: a repository for microarray data generated by NASC's transcriptomics service

被引：288

作者：

Craigon, DJ ^{[1
]}

James, N ^{[1
]}

Okyere, J ^{[1
]}

Higgins, J ^{[1
]}

Jotham, J ^{[1
]}

May, S ^{[1
]}

机构：

[1] Univ Nottingham, Nottingham Arabidopsis Stock Ctr, Div Plant Sci, Loughborough LE12 5RD, Leics, England

来源：

NUCLEIC ACIDS RESEARCH | 2004年 / 32卷

基金：

英国生物技术与生命科学研究理事会;

关键词：

D O I：

10.1093/nar/gkh133

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

NASC operates an Affymetrix 'GeneChip' (microarray) service for the Arabidopsis thaliana community. All data produced by the service are publicly available through our microarray database 'NASCArrays' published at http://affymetrix.arabidopsis.info. The data are accessible through text searching and a series of data mining tools. All data are annotated with sample preparation details, and the original Affymetrix data are available for download. The database aims to be MIAME supportive and provide a coordinated resource for researchers interested in the transcriptome of Arabidopsis. Using this database, data produced will be shared with other databases worldwide.

引用

页码：D575 / D577

页数：3

共 12 条

[1] Minimum information about a microarray experiment (MIAME) - toward standards for microarray data
Brazma, A
Hingamp, P
Quackenbush, J
Sherlock, G
Spellman, P
Stoeckert, C
Aach, J
Ansorge, W
Ball, CA
Causton, HC
Gaasterland, T
Glenisson, P
Holstege, FCP
Kim, IF
Markowitz, V
Matese, JC
Parkinson, H
Robinson, A
Sarkans, U
Schulze-Kremer, S
Stewart, J
Taylor, R
Vilo, J
Vingron, M
[J]. NATURE GENETICS, 2001, 29 (04) : 365 - 371
[2] ArrayExpress - a public repository for microarray gene expression data at the EBI
Brazma, A
Parkinson, H
Sarkans, U
Shojatalab, M
Vilo, J
Abeygunawardena, N
Holloway, E
Kapushesky, M
Kemmeren, P
Lara, GG
Oezcimen, A
Rocca-Serra, P
Sansone, SA
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 68 - 71
[3] Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
Edgar, R
Domrachev, M
Lash, AE
[J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (01) : 207 - 210
[4] The Stanford Microarray Database: data access and quality assessment tools
Gollub, J
Ball, CA
Binkley, G
Demeter, J
Finkelstein, DB
Hebert, JM
Hernandez-Boussard, T
Jin, H
Kaloper, M
Matese, JC
Schroeder, M
Brown, PO
Botstein, D
Sherlock, G
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 94 - 96
[5] Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Kaul, S
Koo, HL
Jenkins, J
Rizzo, M
Rooney, T
Tallon, LJ
Feldblyum, T
Nierman, W
Benito, MI
Lin, XY
Town, CD
Venter, JC
Fraser, CM
Tabata, S
Nakamura, Y
Kaneko, T
Sato, S
Asamizu, E
Kato, T
Kotani, H
Sasamoto, S
Ecker, JR
Theologis, A
Federspiel, NA
Palm, CJ
Osborne, BI
Shinn, P
Conway, AB
Vysotskaia, VS
Dewar, K
Conn, L
Lenz, CA
Kim, CJ
Hansen, NF
Liu, SX
Buehler, E
Altafi, H
Sakano, H
Dunn, P
Lam, B
Pham, PK
Chao, Q
Nguyen, M
Yu, GX
Chen, HM
Southwick, A
Lee, JM
Miranda, M
Toriumi, MJ
Davis, RW
[J]. NATURE, 2000, 408 (6814) : 796 - 815
[6] High density synthetic oligonucleotide arrays
Lipshutz, RJ
Fodor, SPA
Gingeras, TR
Lockhart, DJ
[J]. NATURE GENETICS, 1999, 21 (Suppl 1) : 20 - 24
[7] Expression monitoring by hybridization to high-density oligonucleotide arrays
Lockhart, DJ
Dong, HL
Byrne, MC
Follettie, MT
Gallo, MV
Chee, MS
Mittmann, M
Wang, CW
Kobayashi, M
Horton, H
Brown, EL
[J]. NATURE BIOTECHNOLOGY, 1996, 14 (13) : 1675 - 1680
[8] Arabidopsis thaliana:: A model plant for genome analysis
Meinke, DW
Cherry, JM
Dean, C
Rounsley, SD
Koornneef, M
[J]. SCIENCE, 1998, 282 (5389) : 662 - +
[9] The Arabidopsis Information Resource (TAIR):: a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
Rhee, SY
Beavis, W
Berardini, TZ
Chen, GH
Dixon, D
Doyle, A
Garcia-Hernandez, M
Huala, E
Lander, G
Montoya, M
Miller, N
Mueller, LA
Mundodi, S
Reiser, L
Tacklind, J
Weems, DC
Wu, YH
Xu, I
Yoo, D
Yoon, J
Zhang, PF
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 224 - 228
[10] QUANTITATIVE MONITORING OF GENE-EXPRESSION PATTERNS WITH A COMPLEMENTARY-DNA MICROARRAY
SCHENA, M
SHALON, D
DAVIS, RW
BROWN, PO
[J]. SCIENCE, 1995, 270 (5235) : 467 - 470

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