Rotation of lipids in membranes:: Molecular dynamics simulation, 31P spin-lattice relaxation, and rigid-body dynamics

被引:84
作者
Klauda, Jeffery B.
Roberts, Mary F.
Redfield, Alfred G.
Brooks, Bernard R.
Pastor, Richard W. [1 ]
机构
[1] NIH, NHLBI, Lab Comput Biol, Bethesda, MD 20892 USA
[2] Boston Coll, Dept Chem, Chestnut Hill, MA 02467 USA
[3] Brandeis Univ, Dept Biochem, Waltham, MA USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
D O I
10.1529/biophysj.107.121806
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Molecular dynamics simulations and P-31-NMR spin-lattice (R-1) relaxation rates from 0.022 to 21.1 T of fluid phase dipalmitoylphosphatidylcholine bilayers are compared. Agreement between experiment and direct prediction from simulation indicates that the dominant slow relaxation (correlation) times of the dipolar and chemical shift anisotropy spin-lattice relaxation are similar to 10 ns and 3 ns, respectively. Overall reorientation of the lipid body, consisting of the phosphorus, glycerol, anclacyl chains, is well described within a rigid-body model. Wobble, with D-perpendicular to = 1-2 X 10(8) s(-1), is the primary component of the 10 ns relaxation; this timescale is consistent with the tumbling of a lipid-sized cylinder in a medium with the viscosity of liquid hexadecane. The value for D parallel to, the diffusion constant for rotation about the long axis of the lipid body, is difficult to determine precisely because of averaging by fast motions and wobble; it is tentatively estimated to be 1 X 10(7)s(-1). The resulting D-parallel to/D-perpendicular to approximate to 0. 1 implies that axial rotation is strongly modulated by interactions at the lipid/water interface. Rigid-body modeling and potential of mean force evaluations show that the choline group is relatively uncoupled from the rest of the lipid. This is consistent with the ratio of chemical shift anisotropy and dipolar correlation times reported here and the previous observations that P-31-NMR lineshapes are axially symmetric even in the gel phase of dipalmitoylphosphatidylcholine.
引用
收藏
页码:3074 / 3083
页数:10
相关论文
共 37 条
[21]   A SIMULATION BASED MODEL OF NMR T1 RELAXATION IN LIPID BILAYER VESICLES [J].
PASTOR, RW ;
VENABLE, RM ;
KARPLUS, M ;
SZABO, A .
JOURNAL OF CHEMICAL PHYSICS, 1988, 89 (02) :1128-1140
[22]   Lipid bilayers, NMR relaxation, and computer simulations [J].
Pastor, RW ;
Venable, RM ;
Feller, SE .
ACCOUNTS OF CHEMICAL RESEARCH, 2002, 35 (06) :438-446
[23]   Scalable molecular dynamics with NAMD [J].
Phillips, JC ;
Braun, R ;
Wang, W ;
Gumbart, J ;
Tajkhorshid, E ;
Villa, E ;
Chipot, C ;
Skeel, RD ;
Kalé, L ;
Schulten, K .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (16) :1781-1802
[24]   Shuttling device for high-resolution measurements of relaxation and related phenomena in solution at low field, using a shared commercial 500 MHz NMR instrument [J].
Redfield, AG .
MAGNETIC RESONANCE IN CHEMISTRY, 2003, 41 (10) :753-768
[25]   Phospholipid bilayer surface configuration probed quantitatively by 31P field-cycling NMR [J].
Roberts, MF ;
Redfield, AG .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (49) :17066-17071
[26]   High-resolution 31P field cycling NMR as a probe of phospholipid dynamics [J].
Roberts, MF ;
Redfield, AG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (42) :13765-13777
[27]   Diffusion of cholesterol and its precursors in lipid membranes studied by 1H pulsed field gradient magic angle spinning NMR [J].
Scheidt, HA ;
Huster, D ;
Gawrisch, K .
BIOPHYSICAL JOURNAL, 2005, 89 (04) :2504-2512
[29]   ZWITTERIONIC DIPOLES AS A DIELECTRIC PROBE FOR INVESTIGATING HEAD GROUP MOBILITY IN PHOSPHOLIPID MEMBRANES [J].
SHEPHERD, JCW ;
BULDT, G .
BIOCHIMICA ET BIOPHYSICA ACTA, 1978, 514 (01) :83-94
[30]  
Szabo A, 1986, Ann N Y Acad Sci, V482, P44, DOI 10.1111/j.1749-6632.1986.tb20935.x