Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA

被引:92
作者
Silverman, SK [1 ]
机构
[1] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
关键词
switch; sensor; allosteric; ribozyme; aptazyme;
D O I
10.1261/rna.2200903
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Switches and sensors play important roles in our everyday lives. The chemical properties of RNA make it amenable for use as a switch or sensor, both artificially and in nature. This review focuses on recent advances in artificial RNA switches and sensors. Researchers have been applying classical biochemical principles such as allostery in elegant ways that are influencing the development of biosensors and other applications. Particular attention is given here to allosteric ribozymes (aptazymes) that are regulated by small organic molecules, by proteins, or by oligonucleotides. Also discussed are ribozymes whose activities are controlled by various nonallosteric strategies.
引用
收藏
页码:377 / 383
页数:7
相关论文
共 64 条
[21]   Designed signaling aptamers that transduce molecular recognition to changes in fluorescence intensity [J].
Jhaveri, SD ;
Kirby, R ;
Conrad, R ;
Maglott, EJ ;
Bowser, M ;
Kennedy, RT ;
Glick, G ;
Ellington, AD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (11) :2469-2473
[22]   Cooperative binding of effecters by an allosteric ribozyme [J].
Jose, AM ;
Soukup, GA ;
Breaker, RR .
NUCLEIC ACIDS RESEARCH, 2001, 29 (07) :1631-1637
[23]   A versatile communication module for controlling RNA folding and catalysis [J].
Kertsburg, A ;
Soukup, GA .
NUCLEIC ACIDS RESEARCH, 2002, 30 (21) :4599-4606
[24]  
Koizumi M, 1999, NAT STRUCT BIOL, V6, P1062
[25]   Construction of new ribozymes requiring short regulator oligonucleotides as a cofactor [J].
Komatsu, Y ;
Yamashita, S ;
Kazama, N ;
Nobuoka, K ;
Ohtsuka, E .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 299 (05) :1231-1243
[26]   A novel allosterically trans-activated ribozyme, the maxizyme, with exceptional specificity in vitro and in vivo [J].
Kuwabara, T ;
Warashina, M ;
Tanabe, T ;
Tani, K ;
Asano, S ;
Taira, K .
MOLECULAR CELL, 1998, 2 (05) :617-627
[27]   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans [J].
Lau, NC ;
Lim, LP ;
Weinstein, EG ;
Bartel, DP .
SCIENCE, 2001, 294 (5543) :858-862
[28]   ATP-dependent allosteric DNA enzymes [J].
Levy, M ;
Ellington, AD .
CHEMISTRY & BIOLOGY, 2002, 9 (04) :417-426
[29]   ALTERNATIVE TERTIARY STRUCTURE ATTENUATES SELF-CLEAVAGE OF THE RIBOZYME IN THE SATELLITE RNA OF BARLEY YELLOW DWARF VIRUS [J].
MILLER, WA ;
SILVER, SL .
NUCLEIC ACIDS RESEARCH, 1991, 19 (19) :5313-5320
[30]   Genetic control by a metabolite binding mRNA [J].
Nahvi, A ;
Sudarsan, N ;
Ebert, MS ;
Zou, X ;
Brown, KL ;
Breaker, RR .
CHEMISTRY & BIOLOGY, 2002, 9 (09) :1043-1049