RNAcentral: an international database of ncRNA sequences

被引：80

作者：

Petrov, Anton I. ^{[1
]}

Kay, Simon J. E. ^{[1
]}

Gibson, Richard ^{[1
]}

Kulesha, Eugene ^{[1
]}

Staines, Dan ^{[1
]}

Bruford, Elspeth A. ^{[1
]}

Wright, Mathew W. ^{[1
]}

Burge, Sarah ^{[1
]}

Finn, Robert D. ^{[1
]}

Kersey, Paul J. ^{[1
]}

Cochrane, Guy ^{[1
]}

Bateman, Alex ^{[1
]}

Griffiths-Jones, Sam ^{[2
]}

Harrow, Jennifer ^{[3
]}

Chan, Patricia P. ^{[4
]}

Lowe, Todd M. ^{[4
]}

Zwieb, Christian W. ^{[5
]}

Wower, Jacek ^{[6
]}

Williams, Kelly P. ^{[7
]}

Hudson, Corey M. ^{[7
]}

Gutell, Robin ^{[8
]}

Clark, Michael B. ^{[9
]}

Dinger, Marcel ^{[10
]}

Quek, Xiu Cheng ^{[10
]}

Bujnicki, Janusz M. ^{[11
,12
]}

Chua, Nam-Hai ^{[13
]}

Liu, Jun ^{[13
]}

Wang, Huan ^{[13
]}

Skogerbo, Geir ^{[14
,15
,16
]}

Zhao, Yi ^{[14
,15
,16
]}

Chen, Runsheng ^{[14
,15
,16
]}

Zhu, Weimin ^{[17
,18
]}

Cole, James R. ^{[19
]}

Chai, Benli ^{[19
]}

Huang, Hsien-Da ^{[20
]}

Huang, His-Yuan ^{[20
]}

Cherry, J. Michael ^{[21
]}

Hatzigeorgiou, Artemis ^{[22
]}

Pruitt, Kim D. ^{[23
]}

机构：

[1] European Bioinformat Inst, European Mol Biol Lab, Cambridge CB10 1SD, England

[2] Univ Manchester, Fac Life Sci, Manchester M13 9PT, Lancs, England

[3] Wellcome Trust Sanger Inst, Cambridge CB10 1SD, England

[4] Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA

[5] Univ Texas Hlth Sci Ctr San Antonio, Dept Biochem, San Antonio, TX 78229 USA

[6] Auburn Univ, Dept Anim Sci, Auburn, AL 36849 USA

[7] Sandia Natl Labs, Livermore, CA 94551 USA

[8] Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USA

[9] Univ Oxford, Dept Physiol Anat & Genet, MRC, Funct Genom Unit, Oxford OX1 3PT, England

[10] St Vincents Hosp, Garvan Inst Med Res, Kinghorn Ctr Clin Genom, Darlinghurst, NSW 2010, Australia

[11] Int Inst Mol & Cell Biol Warsaw, Lab Bioinformat & Prot Engn, PL-02109 Warsaw, Poland

[12] Adam Mickiewicz Univ, Inst Mol Biol & Biotechnol, Fac Biol, Lab Bioinformat, PL-61614 Poznan, Poland

[13] Rockefeller Univ, Plant Mol Biol Lab, New York, NY 10065 USA

[14] Chinese Acad Sci, Inst Biophys, Lab Noncoding RNA, Beijing 100101, Peoples R China

[15] Chinese Acad Sci, Inst Comp Technol, Beijing 100190, Peoples R China

[16] Chinese Acad Med Sci, Inst Basic Med Sci, Beijing, Peoples R China

[17] Peking Union Med Coll, Sch Basic Med, Beijing 100005, Peoples R China

[18] Taicang Inst Life Sci Informat, Suzhou 215400, Peoples R China

[19] Michigan State Univ, E Lansing, MI 48824 USA

[20] Natl Chiao Tung Univ, Dept Biol Sci & Technol, Inst Bioinformat & Syst Biol, Hsinchu, Taiwan

[21] Stanford Univ, Dept Genet, Palo Alto, CA 94304 USA

[22] Univ Thessaly, Dept Comp & Commun Engn, Volos 38221, Greece

[23] Natl Lib Med, Natl Ctr Biotechnol Informat, Bethesda, MD 20894 USA

来源：

NUCLEIC ACIDS RESEARCH | 2015年 / 43卷 / D1期

基金：

英国生物技术与生命科学研究理事会; 美国国家卫生研究院;

关键词：

GENOME; EVOLUTION; GENCODE;

D O I：

10.1093/nar/gku991

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The field of non-coding RNA biology has been hampered by the lack of availability of a comprehensive, up-to-date collection of accessioned RNA sequences. Here we present the first release of RNAcentral, a database that collates and integrates information from an international consortium of established RNA sequence databases. The initial release contains over 8.1 million sequences, including representatives of all major functional classes. A web portal (http://rnacentral.org) provides free access to data, search functionality, cross-references, source code and an integrated genome browser for selected species.

引用

页码：D123 / D129

页数：7

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