Mapping human genetic ancestry

被引:90
作者
Ebersberger, Ingo [1 ]
Galgoczy, Petra
Taudien, Stefan
Taenzer, Simone
Platzer, Matthias
von Haeseler, Arndt
机构
[1] Ctr Integrat Bioinformat Vienna, Max F Perutz Labs, Vienna, Austria
[2] Fritz Lipmann Inst, Leibniz Inst Age Res, Jena, Germany
[3] Univ Vienna, A-1010 Vienna, Austria
[4] Med Univ Vienna, Vienna, Austria
[5] Univ Vet Med, Vienna, Austria
关键词
lineage sorting; species evolution; human speciation; homoplasy; fossils;
D O I
10.1093/molbev/msm156
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The human genome is a mosaic with respect to its evolutionary history. Based on a phylogenetic analysis of 23,2 10 DNA sequence alignments from human, chimpanzee, gorilla, orangutan, and rhesus, we present a map of human genetic ancestry. For about 23% of our genome, we share no immediate genetic ancestry with our closest living relative, the chimpanzee. This encompasses genes and exons to the same extent as intergenic regions. We conclude that about 1/3 of our genes started to evolve as human-specific lineages before the differentiation of human, chimps, and gorillas took place. This explains recurrent findings of very old human-specific morphological traits in the fossils record, which predate the recent emergence of the human species about 5-6 MYA. Furthermore, the sorting of such ancestral phenotypic polymorphisms in subsequent speciation events provides a parsimonious explanation why evolutionary derived characteristics are shared among species that are not each other's closest relatives.
引用
收藏
页码:2266 / 2276
页数:11
相关论文
共 57 条
[21]   MANS PLACE IN HOMINOIDEA REVEALED BY MITOCHONDRIAL-DNA GENEALOGY [J].
HORAI, S ;
SATTA, Y ;
HAYASAKA, K ;
KONDO, R ;
INOUE, T ;
ISHIDA, T ;
HAYASHI, S ;
TAKAHATA, N .
JOURNAL OF MOLECULAR EVOLUTION, 1992, 35 (01) :32-43
[22]   Whole-genome sequence assembly for mammalian genomes: Arachne 2 [J].
Jaffe, DB ;
Butler, J ;
Gnerre, S ;
Mauceli, E ;
Lindblad-Toh, K ;
Mesirov, JP ;
Zody, MC ;
Lander, ES .
GENOME RESEARCH, 2003, 13 (01) :91-96
[23]   SYSTEMATIC ASSESSMENT OF EARLY AFRICAN HOMINIDS [J].
JOHANSON, DC ;
WHITE, TD .
SCIENCE, 1979, 203 (4378) :321-330
[24]   Great ape DNA sequences reveal a reduced diversity and an expansion in humans [J].
Kaessmann, H ;
Wiebe, V ;
Weiss, G ;
Pääbo, S .
NATURE GENETICS, 2001, 27 (02) :155-156
[25]   The human genome browser at UCSC [J].
Kent, WJ ;
Sugnet, CW ;
Furey, TS ;
Roskin, KM ;
Pringle, TH ;
Zahler, AM ;
Haussler, D .
GENOME RESEARCH, 2002, 12 (06) :996-1006
[26]  
Kent WJ, 2002, GENOME RES, V12, P656, DOI [10.1101/gr.229202. Article published online before March 2002, 10.1101/gr.229202]
[27]   EVOLUTION AT 2 LEVELS IN HUMANS AND CHIMPANZEES [J].
KING, MC ;
WILSON, AC .
SCIENCE, 1975, 188 (4184) :107-116
[28]  
KLEIN J, 2002, WHERE DO WE COME FRO
[29]   Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway [J].
Kuroki, Y ;
Toyoda, A ;
Noguchi, H ;
Taylor, TD ;
Itoh, T ;
Kim, DS ;
Kim, DW ;
Choi, SH ;
Kim, IC ;
Choi, HH ;
Kim, YS ;
Satta, Y ;
Saitou, N ;
Yamada, T ;
Morishita, S ;
Hattori, M ;
Sakaki, Y ;
Park, HS ;
Fujiyama, A .
NATURE GENETICS, 2006, 38 (02) :158-+
[30]   The chimpanzee and us [J].
Li, WH ;
Saunders, MA .
NATURE, 2005, 437 (7055) :50-51