The exotic zebra mussel, Dreissena polymorpha Pallas, has become a dominant member of nearshore benthic communities in the Laurentian Great Lakes. Suspension-feeding bivalves such as the zebra mussel filter algal particles from the water column and either reject them as pseudofeces, digest them, or egest them as feces. We used laboratory experiments to compare clearance and particle processing of two green algal species by zebra mussels. The effect of algal concentration on clearance rate of Chlamydomonas reinhardtii varied between large and small mussels. When mussels were fed Pandorina morum, clearance rate declined with increasing algal concentration. Mussel size affected clearance of C. reinhardtii but not P. morum. On a diet of P. morum, pseudofeces production was constant across algal concentrations. When fed C. reinhardtii, mussels increased pseudofeces production as algal concentration increased once a threshold was crossed. Below this threshold, no pseudofeces were produced. Measured clearance rates tended to be as high or higher than those previously reported indicationg that incipient limiting concentrations vary with the types of particle processed. Absorption efficiencies were similar for both algal species. Our results show that particle processing by zebra mussels depends on the types of particles present in the water column and the size structure of the mussel population. To accurately determine the impacts of zebra mussels on the trophic structure of ecosystems and the cycling of contaminants, investigators must use realistic algal assemblages and account for the size structure of mussel populations.