Efficient exploration of reaction paths via a freezing string method

被引:164
作者
Behn, Andrew [2 ]
Zimmerman, Paul M. [1 ]
Bell, Alexis T. [2 ]
Head-Gordon, Martin [1 ]
机构
[1] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Dept Chem & Biomol Engn, Berkeley, CA 94720 USA
关键词
NUDGED ELASTIC BAND; MINIMUM ENERGY PATHS; POTENTIAL-ENERGY; SYNCHRONOUS-TRANSIT; ALANINE DIPEPTIDE; SADDLE-POINTS; ALGORITHM; PATHWAYS; QUANTUM; SURFACE;
D O I
10.1063/1.3664901
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The ability to efficiently locate transition states is critically important to the widespread adoption of theoretical chemistry techniques for their ability to accurately predict kinetic constants. Existing surface walking techniques to locate such transition states typically require an extremely good initial guess that is often beyond human intuition to estimate. To alleviate this problem, automated techniques to locate transition state guesses have been created that take the known reactant and product endpoint structures as inputs. In this work, we present a simple method to build an approximate reaction path through a combination of interpolation and optimization. Starting from the known reactant and product structures, new nodes are interpolated inwards towards the transition state, partially optimized orthogonally to the reaction path, and then frozen before a new pair of nodes is added. The algorithm is stopped once the string ends connect. For the practical user, this method provides a quick and convenient way to generate transition state structure guesses. Tests on three reactions (cyclization of cis,cis-2,4-hexadiene, alanine dipeptide conformation transition, and ethylene dimerization in a Ni-exchanged zeolite) show that this "freezing string" method is an efficient way to identify complex transition states with significant cost savings over existing methods, particularly when high quality linear synchronous transit interpolation is employed. (C) 2011 American Institute of Physics. [doi: 10.1063/1.3664901]
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页数:9
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