Noninvasive fetal genomic, methylomic, and transcriptomic analyses using maternal plasma and clinical implications

被引:34
作者
Wong, Ada I. C.
Lo, Y. M. Dennis [1 ]
机构
[1] Chinese Univ Hong Kong, Prince Wales Hosp, Li Ka Shing Inst Hlth Sci, Sha Tin, Hong Kong, Peoples R China
关键词
CELL-FREE DNA; PRENATAL-DIAGNOSIS; CHROMOSOMES; 13; MESSENGER-RNA; DIGITAL PCR; ANEUPLOIDY; METHYLATION; GENE; IDENTIFICATION; CLEARANCE;
D O I
10.1016/j.molmed.2014.12.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
The discovery of cell-free fetal DNA in maternal plasma opened up new possibilities for noninvasive prenatal testing (NIPT). Conceptual advances in single-molecule counting have resulted in robust methods for the NIPT of fetal chromosomal aneuploidies and subchromosomal aberrations. Such methods are employed worldwide and are among the most rapidly adopted genomic tests. Furthermore, approaches for fetal whole-genome sequencing from maternal plasma, as well as for targeted detection of many single-gene disorders, have been reported. Recently, fetal methylome and transcriptome sequencing from maternal plasma have also been achieved, potentially allowing fetal physiological and pathological processes to be monitored noninvasively using maternal blood. These advances herald exciting future applications in prenatal medicine.
引用
收藏
页码:98 / 108
页数:11
相关论文
共 63 条
[11]
Systematic search for placental DNA-methylation markers on chromosome 21: Toward a maternal plasma-based epigenetic test for fetal trisomy 21 [J].
Chim, Stephen S. C. ;
Jin, Shengnan ;
Lee, Tracy Y. H. ;
Lun, Fiona M. F. ;
Lee, Wing S. ;
Chan, Lisa Y. S. ;
Jin, Yongjie ;
Yang, Ningning ;
Tong, Yu K. ;
Leung, Tak Y. ;
Lau, Tze K. ;
Ding, Chunming ;
Chiu, Rossa W. K. ;
Lo, Y. M. Dennis .
CLINICAL CHEMISTRY, 2008, 54 (03) :500-511
[12]
Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: large scale validity study [J].
Chiu, Rossa W. K. ;
Akolekar, Ranjit ;
Zheng, Yama W. L. ;
Leung, Tak Y. ;
Sun, Hao ;
Chan, K. C. Allen ;
Lun, Fiona M. F. ;
Go, Attie T. J. I. ;
Lau, Elizabeth T. ;
To, William W. K. ;
Leung, Wing C. ;
Tang, Rebecca Y. K. ;
Au-Yeung, Sidney K. C. ;
Lam, Helena ;
Kung, Yu Y. ;
Zhang, Xiuqing ;
van Vugt, John M. G. ;
Minekawa, Ryoko ;
Tang, Mary H. Y. ;
Wang, Jun ;
Oudejans, Cees B. M. ;
Lau, Tze K. ;
Nicolaides, Kypros H. ;
Lo, Y. M. Dennis .
BMJ-BRITISH MEDICAL JOURNAL, 2011, 342 :217
[13]
Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma [J].
Chiu, Rossa W. K. ;
Chan, K. C. Allen ;
Gao, Yuan ;
Lau, Virginia Y. M. ;
Zheng, Wenli ;
Leung, Tak Y. ;
Foo, Chris H. F. ;
Xie, Bin ;
Tsui, Nancy B. Y. ;
Lun, Fiona M. F. ;
Zee, Benny C. Y. ;
Lau, Tze K. ;
Cantor, Charles R. ;
Lo, Y. M. Dennis .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (51) :20458-20463
[14]
Chiu RWK, 2002, CLIN CHEM, V48, P778
[15]
Variation in genome-wide mutation rates within and between human families [J].
Conrad, Donald F. ;
Keebler, Jonathan E. M. ;
DePristo, Mark A. ;
Lindsay, Sarah J. ;
Zhang, Yujun ;
Casals, Ferran ;
Idaghdour, Youssef ;
Hartl, Chris L. ;
Torroja, Carlos ;
Garimella, Kiran V. ;
Zilversmit, Martine ;
Cartwright, Reed ;
Rouleau, Guy A. ;
Daly, Mark ;
Stone, Eric A. ;
Hurles, Matthew E. ;
Awadalla, Philip .
NATURE GENETICS, 2011, 43 (07) :712-U137
[16]
Screening for fetal aneuploidy and neural tube defects [J].
Driscoll, Deborah A. ;
Gross, Susan J. .
GENETICS IN MEDICINE, 2009, 11 (11) :818-821
[17]
Noninvasive detection of fetal trisomy 21 by sequencing of DNA in maternal blood: a study in a clinical setting [J].
Ehrich, Mathias ;
Deciu, Cosmin ;
Zwiefelhofer, Tricia ;
Tynan, John A. ;
Cagasan, Lesley ;
Tim, Roger ;
Lu, Vivian ;
McCullough, Ron ;
McCarthy, Erin ;
Nygren, Anders O. H. ;
Dean, Jarrod ;
Tang, Lin ;
Hutchison, Don ;
Lu, Tim ;
Wang, Huiquan ;
Angkachatchai, Vach ;
Oeth, Paul ;
Cantor, Charles R. ;
Bombard, Allan ;
van den Boom, Dirk .
AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY, 2011, 204 (03)
[18]
Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood [J].
Fan, H. Christina ;
Blumenfeld, Yair J. ;
Chitkara, Usha ;
Hudgins, Louanne ;
Quake, Stephen R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (42) :16266-16271
[19]
Detection of aneuploidy with digital polymerase chain reaction [J].
Fan, H. Christina ;
Quake, Stephen R. .
ANALYTICAL CHEMISTRY, 2007, 79 (19) :7576-7579
[20]
Non-invasive prenatal measurement of the fetal genome [J].
Fan, H. Christina ;
Gu, Wei ;
Wang, Jianbin ;
Blumenfeld, Yair J. ;
El-Sayed, Yasser Y. ;
Quake, Stephen R. .
NATURE, 2012, 487 (7407) :320-+