Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients

Fetal hemoglobin (HbF) level has emerged as an important prognostic factor in sickle-cell disease (SCD) and can be measured by the proportion of HbF-containing erythrocytes (F-cells). Recently, BCL11A (zinc-finger protein) was identified as a regulator of HbF, and the strongest association signals were observed either directly for rs766432 or for correlated single-nucleotide polymorphisms (SNPs). To identify additional independently associated genetic variants, we performed a genome-wide association study (GWAS) on the proportion of F-cells in individuals of African ancestry with SCD from the Silent Infarct Transfusion (SIT) Trial cohort. Our study not only confirms the association of rs766432 (P-value < 3.32 x 10(-13)), but also identifies an independent novel intronic SNP, rs7606173, associated with F-cells (P-value < 1.81 x 10(-15)). The F-cell variances explained independently by these two SNPs are similar to 13% (rs7606173) and similar to 11% (rs766432), whereas, together they explain similar to 16%. Additionally, in men, we identify a novel locus on chromosome 17, glucagon-like peptide-2 receptor (GLP2R), associated with F-cell regulation (rs12103880; P-value < 3.41 x 10(-8)). GLP2R encodes a G protein-coupled receptor and involved in proliferative and anti-apoptotic cellular responses. These findings highlight the importance of denser genetic screens and suggest further exploration of the BCL11A and GLP2R loci to gain additional insight into HbF/F-cell regulation. Journal of Human Genetics (2011) 56, 316-323; doi:10.1038/jhg.2011.12; published online 17 February 2011