A mean field approach for molecular simulations of fluid systems

被引:43
作者
Brancato, G
Di Nola, A
Barone, V
Amadei, A
机构
[1] Univ Naples Federico II, Dipartimento Chim, I-80126 Naples, Italy
[2] Univ Roma La Sapienza, Dipartimento Chim, I-00185 Rome, Italy
[3] Univ Roma Tor Vergata, Dipartimento Sci & Tecnol Chim, I-00133 Rome, Italy
关键词
D O I
10.1063/1.1877172
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this paper we introduce a mean field method for simulating complex molecular systems like liquids and solutions. Using well-established theoretical principles and models, we obtained a relatively simple approach which seems to provide a reliable description of the bulk molecular behavior of liquid waler. Moreover, we have applied this approach to study simple solutes in solution, like sodium and chloride ions and acetone. Comparison with standard simulations, performed with periodic boundary conditions, shows that such a mean field method can reproduce the same structural and thermodynamical properties at low computational costs and represents a valid alternative for sirnulating solute-solvent systems, like solutions of large biomolecules. (c) 2005 American Institute of Physics.
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页数:9
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共 46 条
[1]  
Allen M. P., 2017, Computer Simulation of Liquids, VSecond, DOI [10.1093/oso/9780198803195.001.0001, DOI 10.1093/OSO/9780198803195.001.0001]
[2]   COMPUTER-SIMULATIONS OF THE DIELECTRIC-PROPERTIES OF WATER - STUDIES OF THE SIMPLE POINT-CHARGE AND TRANSFERABLE INTERMOLECULAR POTENTIAL MODELS [J].
ALPER, HE ;
LEVY, RM .
JOURNAL OF CHEMICAL PHYSICS, 1989, 91 (02) :1242-1251
[3]   Molecular dynamics simulations with constrained roto-translational motions: Theoretical basis and statistical mechanical consistency [J].
Amadei, A ;
Chillemi, G ;
Ceruso, MA ;
Grottesi, A ;
Di Nola, A .
JOURNAL OF CHEMICAL PHYSICS, 2000, 112 (01) :9-23
[4]   Computation of protein pK's values by an integrated density functional theory/Polarizable Continuum Model approach [J].
Barone, V ;
Improta, R ;
Rega, N .
THEORETICAL CHEMISTRY ACCOUNTS, 2004, 111 (2-6) :237-245
[5]   The electrostatic energy of dipole [J].
Bell, RP .
TRANSACTIONS OF THE FARADAY SOCIETY, 1931, 27 :0797-0802
[6]  
Berendsen H. J. C., 1981, Intermolecular Forces, P331, DOI [10.1007/978-94-015-7658, DOI 10.1007/978-94-015-7658]
[7]   Influence of cut-off truncation and artificial periodicity of electrostatic interactions in molecular simulations of solvated ions:: A continuum electrostatics study [J].
Bergdorf, M ;
Peter, C ;
Hünenberger, PH .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (17) :9129-9144
[8]   Removal of pressure and free energy artifacts in charged periodic systems via net charge corrections to the Ewald potential [J].
Bogusz, S ;
Cheatham, TE ;
Brooks, BR .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (17) :7070-7084
[9]   A 2ND GENERATION FORCE-FIELD FOR THE SIMULATION OF PROTEINS, NUCLEIC-ACIDS, AND ORGANIC-MOLECULES [J].
CORNELL, WD ;
CIEPLAK, P ;
BAYLY, CI ;
GOULD, IR ;
MERZ, KM ;
FERGUSON, DM ;
SPELLMEYER, DC ;
FOX, T ;
CALDWELL, JW ;
KOLLMAN, PA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (19) :5179-5197
[10]   New developments in the polarizable continuum model for quantum mechanical and classical calculations on molecules in solution [J].
Cossi, M ;
Scalmani, G ;
Rega, N ;
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (01) :43-54