TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services

被引:21
作者
Katayama, Toshiaki [1 ]
Nakao, Mitsuteru [2 ,3 ]
Takagi, Toshihisa [2 ,4 ]
机构
[1] Univ Tokyo, Inst Med Sci, Ctr Human Genome, Minato Ku, Tokyo 1088639, Japan
[2] Res Org Informat & Syst, Database Ctr Life Sci, Fac Engn, Bunkyo Ku, Tokyo 1130032, Japan
[3] Kazusa DNA Res Inst, Chiba 2920818, Japan
[4] Res Org Informat & Syst, Natl Inst Genet, Mishima, Shizuoka 4118540, Japan
关键词
BIOLOGY; INSTITUTE; SYSTEM; TOOLS; DDBJ;
D O I
10.1093/nar/gkq386
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Web services have become widely used in bioinformatics analysis, but there exist incompatibilities in interfaces and data types, which prevent users from making full use of a combination of these services. Therefore, we have developed the TogoWS service to provide an integrated interface with advanced features. In the TogoWS REST (REpresentative State Transfer) API (application programming interface), we introduce a unified access method for major database resources through intuitive URIs that can be used to search, retrieve, parse and convert the database entries. The TogoWS SOAP API resolves compatibility issues found on the server and client-side SOAP implementations. The TogoWS service is freely available at: http://togows.dbcls.jp/.
引用
收藏
页码:W706 / W711
页数:6
相关论文
共 18 条
  • [1] Biopython']python: freely available Python']Python tools for computational molecular biology and bioinformatics
    Cock, Peter J. A.
    Antao, Tiago
    Chang, Jeffrey T.
    Chapman, Brad A.
    Cox, Cymon J.
    Dalke, Andrew
    Friedberg, Iddo
    Hamelryck, Thomas
    Kauff, Frank
    Wilczynski, Bartek
    de Hoon, Michiel J. L.
    [J]. BIOINFORMATICS, 2009, 25 (11) : 1422 - 1423
  • [2] Fielding R.T., 2000, REST: Architectural Styles and the Design of Network-based Software Architectures
  • [3] BioJava']Java:: an open-source framework for bioinformatics
    Holland, R. C. G.
    Down, T. A.
    Pocock, M.
    Prlic, A.
    Huen, D.
    James, K.
    Foisy, S.
    Draeger, A.
    Yates, A.
    Heuer, M.
    Schreiber, M. J.
    [J]. BIOINFORMATICS, 2008, 24 (18) : 2096 - 2097
  • [4] Taverna: a tool for building and running workflows of services
    Hull, Duncan
    Wolstencroft, Katy
    Stevens, Robert
    Goble, Carole
    Pocock, Mathew R.
    Li, Peter
    Oinn, Tom
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : W729 - W732
  • [5] KEGG for representation and analysis of molecular networks involving diseases and drugs
    Kanehisa, Minoru
    Goto, Susumu
    Furumichi, Miho
    Tanabe, Mao
    Hirakawa, Mika
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 : D355 - D360
  • [6] Web API for biology with a workflow navigation system
    Kwon, Yeondae
    Shigemoto, Yasumasa
    Kuwana, Yoshikazu
    Sugawara, Hideaki
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : W11 - W16
  • [7] Web services at the European Bioinformatics Institute
    Labarga, Alberto
    Valentin, Franck
    Anderson, Mikael
    Lopez, Rodrigo
    [J]. NUCLEIC ACIDS RESEARCH, 2007, 35 : W6 - W11
  • [8] DDBJ in the stream of various biological data
    Miyazaki, S
    Sugawara, H
    Ikeo, K
    Gojobori, T
    Tateno, Y
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D31 - D34
  • [9] SOAP-based services provided by the european bioinformatics institute
    Pillai, S
    Silventoinen, V
    Kallio, K
    Senger, M
    Sobhany, S
    Tate, J
    Velankar, S
    Golovin, A
    Henrick, K
    Rice, P
    Stoehr, P
    Lopez, R
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : W25 - W28
  • [10] Database resources of the National Center for Biotechnology Information
    Sayers, Eric W.
    Barrett, Tanya
    Benson, Dennis A.
    Bolton, Evan
    Bryant, Stephen H.
    Canese, Kathi
    Chetvernin, Vyacheslav
    Church, Deanna M.
    DiCuccio, Michael
    Federhen, Scott
    Feolo, Michael
    Geer, Lewis Y.
    Helmberg, Wolfgang
    Kapustin, Yuri
    Landsman, David
    Lipman, David J.
    Lu, Zhiyong
    Madden, Thomas L.
    Madej, Tom
    Maglott, Donna R.
    Marchler-Bauer, Aron
    Miller, Vadim
    Mizrachi, Ilene
    Ostell, James
    Panchenko, Anna
    Pruitt, Kim D.
    Schuler, Gregory D.
    Sequeira, Edwin
    Sherry, Stephen T.
    Shumway, Martin
    Sirotkin, Karl
    Slotta, Douglas
    Souvorov, Alexandre
    Starchenko, Grigory
    Tatusova, Tatiana A.
    Wagner, Lukas
    Wang, Yanli
    Wilbur, W. John
    Yaschenko, Eugene
    Ye, Jian
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 : D5 - D16