Theoretical study of tautomeric forms of uracil. 1. Relative order of stabilities and their relation to proton affinities and deprotonation enthalpies

被引:120
作者
Kryachko, ES [1 ]
Nguyen, MT [1 ]
Zeegers-Huyskens, T [1 ]
机构
[1] Univ Louvain, Dept Chem, B-3001 Heverlee, Belgium
关键词
D O I
10.1021/jp001031j
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The potential-energy surface of the uracil tautomerization is comprised of 12 different tautomeric forms, except uracil itself. Their optimized structures are determined at the B3LYP/6-31+G(d,p) computational level. Five structures are reported for the first time, although four of them fall into the relative-energy interval already investigated in the past. The relative order of stability of all uracil structures is established. The proton affinities (PAs) and the deprotonation enthalpies (DPEs) of the atoms or bonds involved in the tautomerization process are calculated at the same computational level. The PAs and DPEs values sensitively depend on the tautomeric form, with the PAs of the oxygen and nitrogen atoms ranging from 815 to 947 kJ mol(-1) and the DPEs of the OH and NH groups from 1295 to 1448 kJ mol(-1). The relative energies of the uracil structures with respect to uracil are then rationalized in terms of a second-order polynomial of the difference between their mean PAs and DPEs.
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页码:1288 / 1295
页数:8
相关论文
共 71 条
[1]   ELECTRICAL-PROPERTIES OF NUCLEIC-ACID BASES [J].
BASCH, H ;
GARMER, DR ;
JASIEN, PG ;
KRAUSS, M ;
STEVENS, WJ .
CHEMICAL PHYSICS LETTERS, 1989, 163 (06) :514-522
[3]   THE ELECTRONIC-SPECTRA OF THE PYRIMIDINE-BASES URACIL AND THYMINE IN A SUPERSONIC MOLECULAR-BEAM [J].
BRADY, BB ;
PETEANU, LA ;
LEVY, DH .
CHEMICAL PHYSICS LETTERS, 1988, 147 (06) :538-543
[4]   MICROWAVE-SPECTRUM OF URACIL [J].
BROWN, RD ;
GODFREY, PD ;
MCNAUGHTON, D ;
PIERLOT, AP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1988, 110 (07) :2329-2330
[5]   PHOTOELECTRON-DETERMINED CORE BINDING-ENERGIES AND PREDICTED GAS-PHASE BASICITIES FOR THE 2-HYDROXYPYRIDINE REVERSIBLE 2-PYRIDONE SYSTEM [J].
BROWN, RS ;
TSE, A ;
VEDERAS, JC .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1980, 102 (03) :1174-1176
[6]   PREDICTION OF PROTON AFFINITIES AND PROTONATION SITES USING A MULTIVARIATE LINEAR CORRELATION [J].
CATALAN, J ;
MO, O ;
PEREZ, P ;
YANEZ, M .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1982, (11) :1409-1418
[7]   Theoretical study of the interaction between thymine and water. Protonation and deprotonation enthalpies and comparison with uracil [J].
Chandra, AK ;
Nguyen, MT ;
Zeegers-Huyskens, T .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (29) :6010-6016
[8]  
Chandra AK, 1999, J PHYS CHEM A, V103, P8853
[9]   MATRIX-ISOLATION STUDIES OF NUCLEIC-ACID CONSTITUENTS .2. QUANTITATIVE ABINITIO PREDICTION OF THE INFRARED-SPECTRUM OF INPLANE MODES OF URACIL [J].
CHIN, S ;
SCOTT, I ;
SZCZEPANIAK, K ;
PERSON, WB .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1984, 106 (12) :3415-3422
[10]   ABINITIO MOLECULAR-ORBITAL CALCULATIONS OF DNA BASES AND THEIR RADICAL IONS IN VARIOUS PROTONATION STATES - EVIDENCE FOR PROTON-TRANSFER IN GC BASE PAIR RADICAL-ANIONS [J].
COLSON, AO ;
BESLER, B ;
CLOSE, DM ;
SEVILLA, MD .
JOURNAL OF PHYSICAL CHEMISTRY, 1992, 96 (02) :661-668