Superwobbling facilitates translation with reduced tRNA sets

被引:122
作者
Rogalski, Marcelo [1 ]
Karcher, Daniel [1 ]
Bock, Ralph [1 ]
机构
[1] Max Planck Inst Mol Pflanzenophysiol, D-14476 Potsdam, Germany
关键词
D O I
10.1038/nsmb.1370
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Some bacterial and most organelle genomes do not encode the full set of 32 tRNA species required to read all codons according to Crick's wobble rules. 'Superwobble', in which a tRNA species with an unmodified U in the wobble position reads all four nucleotides in the third codon position, represents one possible mechanism for how a reduced tRNA set could still suffice. We have tested the superwobble hypothesis by producing knockout mutants for the pair of plastid glycine tRNA genes. Here we show that, whereas the tRNA gene with U in the wobble position is essential, the gene with G in this position is nonessential, demonstrating that the U-containing anticodon can indeed read all four glycine triplets. We also show that the price for superwobbling is a reduced translational efficiency, which explains why most organisms prefer pairs of isoaccepting tRNAs over the superwobbling mechanism.
引用
收藏
页码:192 / 198
页数:7
相关论文
共 36 条
[11]   Targeted inactivation of the smallest plastid genome-encoded open reading frame reveals a novel and essential subunit of the cytochrome b6f complex [J].
Hager, M ;
Biehler, K ;
Illerhaus, J ;
Ruf, S ;
Bock, R .
EMBO JOURNAL, 1999, 18 (21) :5834-5842
[12]   RELOCATION OF THE PLASTID RBCL GENE TO THE NUCLEUS YIELDS FUNCTIONAL RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE IN TOBACCO CHLOROPLASTS [J].
KANEVSKI, I ;
MALIGA, P .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (05) :1969-1973
[13]   EVOLUTION OF MITOCHONDRIAL GENOMES AND THE GENETIC-CODE [J].
KURLAND, CG .
BIOESSAYS, 1992, 14 (10) :709-714
[15]   Origin, evolution and genetic effects of nuclear insertions of organelle DNA [J].
Leister, D .
TRENDS IN GENETICS, 2005, 21 (12) :655-663
[16]   Identification of small non-coding RNAs from mitochondria and chloroplasts [J].
Lung, Birgit ;
Zemann, Anja ;
Madej, Monika J. ;
Schuelke, Markus ;
Techritz, Sandra ;
Ruf, Stephanie ;
Bock, Ralph ;
Huettenhofer, Alexander .
NUCLEIC ACIDS RESEARCH, 2006, 34 (14) :3842-3852
[17]   Structure of the chloroplast ribosome: Novel domains for translation regulation [J].
Manuell, Andrea L. ;
Quispe, Joel ;
Mayfield, Stephen P. .
PLOS BIOLOGY, 2007, 5 (08) :1785-1797
[18]   A REVISED MEDIUM FOR RAPID GROWTH AND BIO ASSAYS WITH TOBACCO TISSUE CULTURES [J].
MURASHIGE, T ;
SKOOG, F .
PHYSIOLOGIA PLANTARUM, 1962, 15 (03) :473-497
[19]   Structure of a purine-purine wobble base pair in the decoding center of the ribosome [J].
Murphy, FV ;
Ramakrishnan, V .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (12) :11251-1252
[20]   The modified wobble nucleoside uridine-5-oxyacetic acid in tRNAcmo5UGGPro promotes reading of all four proline codons in vivo [J].
Näsvall, SJ ;
Chen, P ;
Björk, GR .
RNA, 2004, 10 (10) :1662-1673