NMR methods for studying quadruplex nucleic acids

被引:108
作者
da Silva, Mateus Webba [1 ]
机构
[1] Univ Ulster, Sch Biomed Sci, Coleraine BT52 1SA, Londonderry, North Ireland
关键词
NMR; quadruplexes; trans-hydrogen bonds; residual dipolar couplings; dynamics; structure calculation;
D O I
10.1016/j.ymeth.2007.05.007
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Solution NMR spectroscopy has traditionally played a central role in examining quadruplex structure, dynamics, and interactions. Here, an overview is given of the methods currently applied to structural, dynamics, thermodynamics, and kinetics studies of nucleic acid quadruplexes and associated cations. (c) 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:264 / 277
页数:14
相关论文
共 132 条
[1]   Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy [J].
Al-Hashimi, HM .
CHEMBIOCHEM, 2005, 6 (09) :1506-1519
[2]   Determining stoichiometry in homomultimeric nucleic acid complexes using magnetic field induced residual dipolar couplings [J].
Al-Hashimi, HM ;
Tolman, JR ;
Majumdar, A ;
Gorin, A ;
Patel, DJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (24) :5806-5807
[3]   Field- and phage-induced dipolar couplings in a homodimeric DNA quadruplex, relative orientation of G•(C-A) triad and G-tetrad motifs and direct determination of C2 symmetry axis orientation [J].
Al-Hashimi, HM ;
Majumdar, A ;
Gorin, A ;
Kettani, A ;
Skripkin, E ;
Patel, DJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (04) :633-640
[4]  
ALTONA C, 1982, RECL TRAV CHIM PAY B, V101, P413
[5]   Solution structure of the biologically relevant g-quadruplex element in the human c-MYC promoter. implications for g-quadruplex stabilization [J].
Ambrus, A ;
Chen, D ;
Dai, JX ;
Jones, RA ;
Yang, DZ .
BIOCHEMISTRY, 2005, 44 (06) :2048-2058
[6]   Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution [J].
Ambrus, Attila ;
Chen, Ding ;
Dai, Jixun ;
Bialis, Tiffanie ;
Jones, Roger A. ;
Yang, Danzhou .
NUCLEIC ACIDS RESEARCH, 2006, 34 (09) :2723-2735
[7]   Direct detection of monovalent metal ion binding to a DNA G-quartet by 205Tl NMR [J].
Basu, S ;
Szewczak, AA ;
Cocco, M ;
Strobel, SA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (13) :3240-3241
[8]   MEASUREMENT OF H-1-H-1 COUPLING-CONSTANTS IN DNA FRAGMENTS BY 2D NMR [J].
BAX, A ;
LERNER, L .
JOURNAL OF MAGNETIC RESONANCE, 1988, 79 (03) :429-438
[9]   Determination of internuclear angles of DNA using paramagnetic assisted magnetic alignment [J].
Beger, RD ;
Marathias, VM ;
Volkman, BF ;
Bolton, PH .
JOURNAL OF MAGNETIC RESONANCE, 1998, 135 (01) :256-259
[10]   Distinctive features in the structure and dynamics of the DNA repeat sequence GGCGGG [J].
Bhavesh, NS ;
Patel, PK ;
Karthikeyan, S ;
Hosur, RV .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2004, 317 (02) :625-633