Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy

被引:58
作者
Al-Hashimi, HM [1 ]
机构
[1] Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Div Biophys Res, Ann Arbor, MI 48109 USA
关键词
D O I
10.1002/cbic.200500002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The ever-increasing cellular roles ascribed to RNA raise fundamental questions regarding how a biopolymer composed of only four chemically similar building block nucleotides achieves such functional diversity. Here, I discuss how RNA achieves added mechanistic and chemical complexity by undergoing highly controlled conformational changes in response to a variety of cellular signals. I examine pathways for achieving selectivity in these conformational changes that rely to different extents on the structure and dynamics of RNA. Finally, I review solution-state NMR techniques that can be used to characterize RNA structural dynamics and its relationship to function.
引用
收藏
页码:1506 / 1519
页数:14
相关论文
共 180 条
[1]   A simple model for NMR relaxation in the presence of internal motions with dynamical coupling [J].
Abergel, D ;
Bodenhausen, G .
JOURNAL OF CHEMICAL PHYSICS, 2004, 121 (02) :761-768
[2]   Structure of HIV-1 TAB RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge [J].
AboulEla, F ;
Karn, J ;
Varani, G .
NUCLEIC ACIDS RESEARCH, 1996, 24 (20) :3974-3981
[3]   THE STRUCTURE OF THE HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 TAR RNA REVEALS PRINCIPLES OF RNA RECOGNITION BY TAT PROTEIN [J].
ABOULELA, F ;
KARN, J ;
VARANI, G .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 253 (02) :313-332
[4]   Structure of the S15,S18-rRNA complex: Assembly of the 30S ribosome central domain [J].
Agalarov, SC ;
Prasad, GS ;
Funke, PM ;
Stout, CD ;
Williamson, JR .
SCIENCE, 2000, 288 (5463) :107-112
[5]  
Akke M, 1997, RNA, V3, P702
[7]   Mg2+-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings [J].
Al-Hashimi, HM ;
Pitt, SW ;
Majumdar, A ;
Xu, WJ ;
Patel, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 329 (05) :867-873
[8]   Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings [J].
Al-Hashimi, HM ;
Gosser, Y ;
Gorin, A ;
Hu, WD ;
Majumdar, A ;
Patel, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 315 (02) :95-102
[9]   Towards structural Genomics of RNA: Rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings [J].
Al-Hashimi, HM ;
Gorin, A ;
Majumdar, A ;
Gosser, Y ;
Patel, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 318 (03) :637-649
[10]   Determining stoichiometry in homomultimeric nucleic acid complexes using magnetic field induced residual dipolar couplings [J].
Al-Hashimi, HM ;
Tolman, JR ;
Majumdar, A ;
Gorin, A ;
Patel, DJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (24) :5806-5807