GFT NMR experiments for polypeptide backbone and 13Cβ chemical shift assignment

被引:40
作者
Kim, S [1 ]
Szyperski, T [1 ]
机构
[1] SUNY Buffalo, Dept Chem, Buffalo, NY 14260 USA
关键词
automated protein NMR assignment; GFT NMR spectroscopy; high throughput; protein structure; structural genomics;
D O I
10.1023/B:JNMR.0000013827.20574.46
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
(4,3)D, (5,3)D and (5,2)D GIFT triple resonance NMR experiments are presented for polypeptide backbone and C-13(beta) resonance assignment of N-15/C-13 labeled proteins. The joint sampling of m = 2, 3 or 4 indirect chemical shift evolution periods of 4D and 5D NMR experiments yields the measurement of 2(m) - 1 linear combinations of shifts. To obtain sequential assignments, these are matched in corresponding experiments delineating either intra or inter-residue correlations. Hence, an increased set of matches is registered when compared to conventional approaches, and the 4D or 5D information allows one to efficiently break chemical shift degeneracy. Moreover, comparison of single-quantum chemical shifts obtained after a least squares fit using either the intra or the interresidue data demonstrates that GFT NMR warrants highly accurate shift measurements. The new features of GFT NMR based resonance assignment strategies promise to be of particular value for establishing automated protocols.
引用
收藏
页码:117 / 130
页数:14
相关论文
共 45 条