Utility library for structural bioinformatics

被引：38

作者：

Gront, Dominik ^{[1
]}

Kolinski, Andrzej ^{[1
]}

机构：

[1] Univ Warsaw, Fac Chem, PL-02093 Warsaw, Poland

来源：

BIOINFORMATICS | 2008年 / 24卷 / 04期

关键词：

D O I：

10.1093/bioinformatics/btm627

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

In this Note we present a new software library for structural bioinformatics. The library contains programs, computing sequence- and profile-based alignments and a variety of structural calculations with user-friendly handling of various data formats. The software organization is very flexible. Algorithms are written in Java language and may be used by Java programs. Moreover the modules can be accessed from Jython (Python scripting language implemented in Java) scripts. Finally, the new version of BioShell delivers several utility programs that can do typical bioinformatics task from a command-line level.

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收藏

页码：584 / 585

页数：2

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